Strain Fitness in Escherichia coli ECOR27 around NOLOHH_19640

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_19630 and NOLOHH_19635 are separated by 473 nucleotidesNOLOHH_19635 and NOLOHH_19640 are separated by 60 nucleotidesNOLOHH_19640 and NOLOHH_19645 are separated by 26 nucleotidesNOLOHH_19645 and NOLOHH_19650 overlap by 4 nucleotidesNOLOHH_19650 and NOLOHH_19655 are separated by 0 nucleotides NOLOHH_19630: NOLOHH_19630 - phage tail tape measure protein, at 3,876,188 to 3,879,421 _19630 NOLOHH_19635: NOLOHH_19635 - hypothetical protein, at 3,879,895 to 3,880,344 _19635 NOLOHH_19640: NOLOHH_19640 - Phage tail tube protein, at 3,880,405 to 3,881,367 _19640 NOLOHH_19645: NOLOHH_19645 - electron transfer flavoprotein subunit beta, at 3,881,394 to 3,881,786 _19645 NOLOHH_19650: NOLOHH_19650 - Electron transfer flavoprotein subunit beta, at 3,881,783 to 3,882,163 _19650 NOLOHH_19655: NOLOHH_19655 - glutamate 5-kinase, at 3,882,164 to 3,882,547 _19655 Position (kb) 3880 3881 3882Strain fitness (log2 ratio) -2 -1 0 1 2at 3879.477 kb on - strandat 3879.678 kb on - strandat 3880.086 kb on - strand, within NOLOHH_19635at 3880.280 kb on - strand, within NOLOHH_19635at 3880.374 kb on - strandat 3880.865 kb on - strand, within NOLOHH_19640at 3881.046 kb on - strand, within NOLOHH_19640at 3881.046 kb on - strand, within NOLOHH_19640at 3881.311 kb on - strandat 3881.347 kb on - strandat 3881.379 kb on - strandat 3881.379 kb on - strandat 3881.387 kb on - strandat 3881.713 kb on - strand, within NOLOHH_19645

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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3,879,477 - -0.2
3,879,678 - +0.9
3,880,086 - NOLOHH_19635 0.42 -0.7
3,880,280 - NOLOHH_19635 0.86 +0.6
3,880,374 - +1.3
3,880,865 - NOLOHH_19640 0.48 -2.0
3,881,046 - NOLOHH_19640 0.67 +0.0
3,881,046 - NOLOHH_19640 0.67 -0.6
3,881,311 - +0.3
3,881,347 - +1.1
3,881,379 - -0.5
3,881,379 - +1.8
3,881,387 - +0.9
3,881,713 - NOLOHH_19645 0.81 +1.7

Or see this region's nucleotide sequence