Strain Fitness in Escherichia coli ECOR27 around NOLOHH_19320

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydcK and rimL overlap by 9 nucleotidesrimL and ydcH are separated by 62 nucleotidesydcH and opgD are separated by 139 nucleotides NOLOHH_19310: ydcK - YdcK family protein, at 3,805,593 to 3,806,573 ydcK NOLOHH_19315: rimL - 50S ribosomal protein L7/L12-serine acetyltransferase, at 3,806,565 to 3,807,104 rimL NOLOHH_19320: ydcH - Uncharacterized protein YdcH, at 3,807,167 to 3,807,391 ydcH NOLOHH_19325: opgD - glucan biosynthesis protein OpgD, at 3,807,531 to 3,809,150 opgD Position (kb) 3807 3808Strain fitness (log2 ratio) -2 -1 0 1 2at 3807.107 kb on + strandat 3807.219 kb on - strand, within ydcHat 3807.335 kb on - strand, within ydcHat 3807.533 kb on - strandat 3807.557 kb on - strandat 3807.612 kb on - strandat 3807.631 kb on - strandat 3807.635 kb on - strandat 3807.635 kb on - strandat 3807.635 kb on - strandat 3807.717 kb on - strand, within opgDat 3807.719 kb on - strand, within opgDat 3808.118 kb on + strand, within opgDat 3808.171 kb on - strand, within opgDat 3808.350 kb on - strand, within opgD

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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3,807,107 + -1.8
3,807,219 - ydcH NOLOHH_19320 0.23 -0.6
3,807,335 - ydcH NOLOHH_19320 0.75 -2.0
3,807,533 - +2.0
3,807,557 - +0.2
3,807,612 - -0.0
3,807,631 - +0.6
3,807,635 - -0.2
3,807,635 - -1.2
3,807,635 - +1.0
3,807,717 - opgD NOLOHH_19325 0.11 -1.0
3,807,719 - opgD NOLOHH_19325 0.12 +0.6
3,808,118 + opgD NOLOHH_19325 0.36 +0.6
3,808,171 - opgD NOLOHH_19325 0.40 -0.5
3,808,350 - opgD NOLOHH_19325 0.51 +0.7

Or see this region's nucleotide sequence