Experiment: Bas37
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ddpA and ddpB are separated by 1 nucleotides ddpB and ddpC overlap by 4 nucleotides ddpC and dppD overlap by 4 nucleotides
NOLOHH_18960: ddpA - putative D,D-dipeptide-binding periplasmic protein DdpA, at 3,725,873 to 3,727,423
ddpA
NOLOHH_18965: ddpB - putative D,D-dipeptide transport system permease protein DdpB, at 3,727,425 to 3,728,447
ddpB
NOLOHH_18970: ddpC - D,D-dipeptide ABC transporter permease, at 3,728,444 to 3,729,340
ddpC
NOLOHH_18975: dppD - ABC transporter ATP-binding protein, at 3,729,337 to 3,730,323
dppD
Position (kb)
3727
3728
3729 Strain fitness (log2 ratio)
-1
0
1
2 at 3726.545 kb on - strand, within ddpA at 3726.707 kb on + strand, within ddpA at 3726.708 kb on - strand, within ddpA at 3727.133 kb on + strand, within ddpA at 3727.135 kb on + strand, within ddpA at 3727.261 kb on + strand, within ddpA at 3727.310 kb on + strand at 3727.310 kb on + strand at 3727.311 kb on - strand at 3727.311 kb on - strand at 3727.317 kb on - strand at 3727.439 kb on + strand at 3727.496 kb on + strand at 3727.614 kb on + strand, within ddpB at 3727.615 kb on - strand, within ddpB at 3727.706 kb on + strand, within ddpB at 3728.166 kb on + strand, within ddpB at 3728.168 kb on + strand, within ddpB at 3728.314 kb on + strand, within ddpB at 3728.565 kb on + strand, within ddpC at 3728.565 kb on + strand, within ddpC at 3728.565 kb on + strand, within ddpC at 3728.954 kb on + strand, within ddpC at 3728.982 kb on + strand, within ddpC at 3728.996 kb on + strand, within ddpC at 3729.002 kb on + strand, within ddpC at 3729.002 kb on + strand, within ddpC at 3729.145 kb on + strand, within ddpC at 3729.209 kb on + strand, within ddpC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas37 remove 3,726,545 - ddpA NOLOHH_18960 0.43 +0.4 3,726,707 + ddpA NOLOHH_18960 0.54 +1.0 3,726,708 - ddpA NOLOHH_18960 0.54 -0.0 3,727,133 + ddpA NOLOHH_18960 0.81 +0.0 3,727,135 + ddpA NOLOHH_18960 0.81 +0.4 3,727,261 + ddpA NOLOHH_18960 0.89 +1.3 3,727,310 + -0.5 3,727,310 + -0.5 3,727,311 - +1.4 3,727,311 - -0.4 3,727,317 - +0.2 3,727,439 + +0.3 3,727,496 + +1.9 3,727,614 + ddpB NOLOHH_18965 0.18 +0.4 3,727,615 - ddpB NOLOHH_18965 0.19 +0.4 3,727,706 + ddpB NOLOHH_18965 0.27 -0.3 3,728,166 + ddpB NOLOHH_18965 0.72 -0.8 3,728,168 + ddpB NOLOHH_18965 0.73 +0.1 3,728,314 + ddpB NOLOHH_18965 0.87 -1.0 3,728,565 + ddpC NOLOHH_18970 0.13 -0.4 3,728,565 + ddpC NOLOHH_18970 0.13 -0.9 3,728,565 + ddpC NOLOHH_18970 0.13 +0.4 3,728,954 + ddpC NOLOHH_18970 0.57 -0.5 3,728,982 + ddpC NOLOHH_18970 0.60 +1.2 3,728,996 + ddpC NOLOHH_18970 0.62 +1.5 3,729,002 + ddpC NOLOHH_18970 0.62 +0.2 3,729,002 + ddpC NOLOHH_18970 0.62 +1.3 3,729,145 + ddpC NOLOHH_18970 0.78 +0.0 3,729,209 + ddpC NOLOHH_18970 0.85 +0.3
Or see this region's nucleotide sequence