Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18965

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntddpA and ddpB are separated by 1 nucleotidesddpB and ddpC overlap by 4 nucleotidesddpC and dppD overlap by 4 nucleotides NOLOHH_18960: ddpA - putative D,D-dipeptide-binding periplasmic protein DdpA, at 3,725,873 to 3,727,423 ddpA NOLOHH_18965: ddpB - putative D,D-dipeptide transport system permease protein DdpB, at 3,727,425 to 3,728,447 ddpB NOLOHH_18970: ddpC - D,D-dipeptide ABC transporter permease, at 3,728,444 to 3,729,340 ddpC NOLOHH_18975: dppD - ABC transporter ATP-binding protein, at 3,729,337 to 3,730,323 dppD Position (kb) 3727 3728 3729Strain fitness (log2 ratio) -1 0 1 2at 3726.545 kb on - strand, within ddpAat 3726.707 kb on + strand, within ddpAat 3726.708 kb on - strand, within ddpAat 3727.133 kb on + strand, within ddpAat 3727.135 kb on + strand, within ddpAat 3727.261 kb on + strand, within ddpAat 3727.310 kb on + strandat 3727.310 kb on + strandat 3727.311 kb on - strandat 3727.311 kb on - strandat 3727.317 kb on - strandat 3727.439 kb on + strandat 3727.496 kb on + strandat 3727.614 kb on + strand, within ddpBat 3727.615 kb on - strand, within ddpBat 3727.706 kb on + strand, within ddpBat 3728.166 kb on + strand, within ddpBat 3728.168 kb on + strand, within ddpBat 3728.314 kb on + strand, within ddpBat 3728.565 kb on + strand, within ddpCat 3728.565 kb on + strand, within ddpCat 3728.565 kb on + strand, within ddpCat 3728.954 kb on + strand, within ddpCat 3728.982 kb on + strand, within ddpCat 3728.996 kb on + strand, within ddpCat 3729.002 kb on + strand, within ddpCat 3729.002 kb on + strand, within ddpCat 3729.145 kb on + strand, within ddpCat 3729.209 kb on + strand, within ddpC

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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3,726,545 - ddpA NOLOHH_18960 0.43 +0.4
3,726,707 + ddpA NOLOHH_18960 0.54 +1.0
3,726,708 - ddpA NOLOHH_18960 0.54 -0.0
3,727,133 + ddpA NOLOHH_18960 0.81 +0.0
3,727,135 + ddpA NOLOHH_18960 0.81 +0.4
3,727,261 + ddpA NOLOHH_18960 0.89 +1.3
3,727,310 + -0.5
3,727,310 + -0.5
3,727,311 - +1.4
3,727,311 - -0.4
3,727,317 - +0.2
3,727,439 + +0.3
3,727,496 + +1.9
3,727,614 + ddpB NOLOHH_18965 0.18 +0.4
3,727,615 - ddpB NOLOHH_18965 0.19 +0.4
3,727,706 + ddpB NOLOHH_18965 0.27 -0.3
3,728,166 + ddpB NOLOHH_18965 0.72 -0.8
3,728,168 + ddpB NOLOHH_18965 0.73 +0.1
3,728,314 + ddpB NOLOHH_18965 0.87 -1.0
3,728,565 + ddpC NOLOHH_18970 0.13 -0.4
3,728,565 + ddpC NOLOHH_18970 0.13 -0.9
3,728,565 + ddpC NOLOHH_18970 0.13 +0.4
3,728,954 + ddpC NOLOHH_18970 0.57 -0.5
3,728,982 + ddpC NOLOHH_18970 0.60 +1.2
3,728,996 + ddpC NOLOHH_18970 0.62 +1.5
3,729,002 + ddpC NOLOHH_18970 0.62 +0.2
3,729,002 + ddpC NOLOHH_18970 0.62 +1.3
3,729,145 + ddpC NOLOHH_18970 0.78 +0.0
3,729,209 + ddpC NOLOHH_18970 0.85 +0.3

Or see this region's nucleotide sequence