Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18900

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydeO and ydeN are separated by 401 nucleotidesydeN and ydeM are separated by 51 nucleotides NOLOHH_18895: ydeO - acid stress response transcriptional regulator YdeO, at 3,704,654 to 3,705,415 ydeO NOLOHH_18900: ydeN - Uncharacterized sulfatase YdeN, at 3,705,817 to 3,707,499 ydeN NOLOHH_18905: ydeM - anaerobic sulfatase maturase, at 3,707,551 to 3,708,708 ydeM Position (kb) 3705 3706 3707 3708Strain fitness (log2 ratio) -1 0 1at 3705.461 kb on + strandat 3705.800 kb on + strandat 3705.800 kb on + strandat 3705.800 kb on + strandat 3705.845 kb on + strandat 3707.144 kb on - strand, within ydeNat 3707.250 kb on - strand, within ydeNat 3707.318 kb on + strand, within ydeN

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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3,705,461 + -1.6
3,705,800 + +1.0
3,705,800 + -0.5
3,705,800 + -0.5
3,705,845 + -1.3
3,707,144 - ydeN NOLOHH_18900 0.79 +0.6
3,707,250 - ydeN NOLOHH_18900 0.85 -1.0
3,707,318 + ydeN NOLOHH_18900 0.89 -0.6

Or see this region's nucleotide sequence