Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18755

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyneK and yneK overlap by 4 nucleotidesyneK and yneK overlap by 52 nucleotidesyneK and yneJ are separated by 77 nucleotidesyneJ and sad are separated by 100 nucleotides NOLOHH_18740: yneK - putative protein YneK, at 3,667,703 to 3,667,927 yneK NOLOHH_18745: yneK - putative protein YneK, at 3,667,924 to 3,668,409 yneK NOLOHH_18750: yneK - putative protein YneK, at 3,668,358 to 3,668,816 yneK NOLOHH_18755: yneJ - Uncharacterized HTH-type transcriptional regulator YneJ, at 3,668,894 to 3,669,775 yneJ NOLOHH_18760: sad - succinate-semialdehyde dehydrogenase, at 3,669,876 to 3,671,264 sad Position (kb) 3668 3669 3670Strain fitness (log2 ratio) -1 0 1at 3668.788 kb on + strandat 3669.076 kb on + strand, within yneJat 3669.142 kb on + strand, within yneJat 3669.388 kb on + strand, within yneJat 3669.860 kb on + strandat 3669.910 kb on + strandat 3670.022 kb on + strand, within sadat 3670.023 kb on - strand, within sadat 3670.211 kb on + strand, within sadat 3670.238 kb on + strand, within sadat 3670.348 kb on + strand, within sadat 3670.348 kb on + strand, within sadat 3670.348 kb on + strand, within sadat 3670.348 kb on + strand, within sadat 3670.429 kb on + strand, within sadat 3670.429 kb on + strand, within sadat 3670.429 kb on + strand, within sadat 3670.697 kb on + strand, within sad

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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3,668,788 + +0.6
3,669,076 + yneJ NOLOHH_18755 0.21 -0.1
3,669,142 + yneJ NOLOHH_18755 0.28 -0.5
3,669,388 + yneJ NOLOHH_18755 0.56 -0.8
3,669,860 + -0.4
3,669,910 + +0.4
3,670,022 + sad NOLOHH_18760 0.11 +0.1
3,670,023 - sad NOLOHH_18760 0.11 +0.8
3,670,211 + sad NOLOHH_18760 0.24 -0.6
3,670,238 + sad NOLOHH_18760 0.26 -0.7
3,670,348 + sad NOLOHH_18760 0.34 +1.4
3,670,348 + sad NOLOHH_18760 0.34 -1.2
3,670,348 + sad NOLOHH_18760 0.34 +1.5
3,670,348 + sad NOLOHH_18760 0.34 +0.4
3,670,429 + sad NOLOHH_18760 0.40 -0.7
3,670,429 + sad NOLOHH_18760 0.40 +0.3
3,670,429 + sad NOLOHH_18760 0.40 +0.3
3,670,697 + sad NOLOHH_18760 0.59 +1.4

Or see this region's nucleotide sequence