Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17705

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydiP and ydiO are separated by 42 nucleotidesydiO and ydiF are separated by 13 nucleotides NOLOHH_17700: ydiP - Uncharacterized HTH-type transcriptional regulator YdiP, at 3,473,915 to 3,474,826 ydiP NOLOHH_17705: ydiO - acyl-CoA dehydrogenase, at 3,474,869 to 3,476,020 ydiO NOLOHH_17710: ydiF - Acetate CoA-transferase YdiF, at 3,476,034 to 3,477,629 ydiF Position (kb) 3474 3475 3476 3477Strain fitness (log2 ratio) -2 -1 0 1at 3473.878 kb on + strandat 3474.944 kb on - strandat 3475.408 kb on + strand, within ydiOat 3475.408 kb on + strand, within ydiOat 3475.424 kb on - strand, within ydiOat 3475.454 kb on - strand, within ydiOat 3475.530 kb on + strand, within ydiOat 3475.579 kb on - strand, within ydiO

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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3,473,878 + -1.4
3,474,944 - -0.8
3,475,408 + ydiO NOLOHH_17705 0.47 -2.1
3,475,408 + ydiO NOLOHH_17705 0.47 -0.2
3,475,424 - ydiO NOLOHH_17705 0.48 -2.0
3,475,454 - ydiO NOLOHH_17705 0.51 -0.0
3,475,530 + ydiO NOLOHH_17705 0.57 -0.6
3,475,579 - ydiO NOLOHH_17705 0.62 +0.2

Or see this region's nucleotide sequence