Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17480

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntosmE and chbB are separated by 298 nucleotideschbB and chbC are separated by 84 nucleotideschbC and chbA are separated by 50 nucleotideschbA and chbR are separated by 10 nucleotides NOLOHH_17470: osmE - osmotically-inducible lipoprotein OsmE, at 3,429,670 to 3,430,008 osmE NOLOHH_17475: chbB - PTS N,N'-diacetylchitobiose transporter subunit IIB, at 3,430,307 to 3,430,627 chbB NOLOHH_17480: chbC - PTS N,N'-diacetylchitobiose transporter subunit IIC, at 3,430,712 to 3,432,070 chbC NOLOHH_17485: chbA - PTS N,N'-diacetylchitobiose transporter subunit IIA, at 3,432,121 to 3,432,471 chbA NOLOHH_17490: chbR - transcriptional regulator ChbR, at 3,432,482 to 3,433,321 chbR Position (kb) 3430 3431 3432 3433Strain fitness (log2 ratio) -2 -1 0 1 2at 3429.732 kb on + strand, within osmEat 3429.739 kb on + strand, within osmEat 3429.880 kb on + strand, within osmEat 3429.979 kb on + strandat 3430.006 kb on + strandat 3430.031 kb on + strandat 3430.168 kb on + strandat 3430.325 kb on + strandat 3430.855 kb on + strand, within chbCat 3431.104 kb on + strand, within chbCat 3431.104 kb on + strand, within chbCat 3431.120 kb on + strand, within chbCat 3431.765 kb on - strand, within chbCat 3431.802 kb on + strand, within chbCat 3431.841 kb on - strand, within chbCat 3431.973 kb on + strandat 3431.978 kb on + strandat 3432.120 kb on + strandat 3432.120 kb on + strandat 3432.401 kb on + strand, within chbA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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3,429,732 + osmE NOLOHH_17470 0.18 +1.4
3,429,739 + osmE NOLOHH_17470 0.20 -0.8
3,429,880 + osmE NOLOHH_17470 0.62 -1.1
3,429,979 + +0.0
3,430,006 + -0.0
3,430,031 + +0.2
3,430,168 + -1.7
3,430,325 + +0.5
3,430,855 + chbC NOLOHH_17480 0.11 +0.7
3,431,104 + chbC NOLOHH_17480 0.29 -0.7
3,431,104 + chbC NOLOHH_17480 0.29 -1.4
3,431,120 + chbC NOLOHH_17480 0.30 +1.8
3,431,765 - chbC NOLOHH_17480 0.77 -1.6
3,431,802 + chbC NOLOHH_17480 0.80 +0.8
3,431,841 - chbC NOLOHH_17480 0.83 -0.7
3,431,973 + +0.5
3,431,978 + -0.1
3,432,120 + +1.3
3,432,120 + -2.3
3,432,401 + chbA NOLOHH_17485 0.80 -0.2

Or see this region's nucleotide sequence