Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17365

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgdhA and ynjH are separated by 235 nucleotidesynjH and nudG overlap by 35 nucleotidesnudG and ynjF are separated by 86 nucleotidesynjF and ynjE are separated by 8 nucleotides NOLOHH_17355: gdhA - NADP-specific glutamate dehydrogenase, at 3,408,212 to 3,409,555 gdhA NOLOHH_17360: ynjH - Uncharacterized protein YnjH, at 3,409,791 to 3,410,063 ynjH NOLOHH_17365: nudG - CTP pyrophosphohydrolase, at 3,410,029 to 3,410,436 nudG NOLOHH_17370: ynjF - Inner membrane protein YnjF, at 3,410,523 to 3,411,143 ynjF NOLOHH_17375: ynjE - thiosulfate sulfurtransferase YnjE, at 3,411,152 to 3,412,459 ynjE Position (kb) 3410 3411Strain fitness (log2 ratio) -2 -1 0 1at 3409.145 kb on - strand, within gdhAat 3409.463 kb on + strandat 3409.464 kb on - strandat 3409.543 kb on - strandat 3409.819 kb on + strand, within ynjHat 3410.279 kb on - strand, within nudGat 3410.384 kb on - strand, within nudGat 3410.441 kb on + strandat 3410.505 kb on + strandat 3410.506 kb on - strandat 3410.507 kb on + strandat 3410.507 kb on + strandat 3410.614 kb on + strand, within ynjFat 3410.799 kb on + strand, within ynjFat 3410.799 kb on + strand, within ynjFat 3410.957 kb on + strand, within ynjFat 3410.957 kb on + strand, within ynjFat 3410.970 kb on + strand, within ynjFat 3411.007 kb on + strand, within ynjFat 3411.007 kb on + strand, within ynjFat 3411.160 kb on + strandat 3411.270 kb on + strandat 3411.274 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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3,409,145 - gdhA NOLOHH_17355 0.69 -1.1
3,409,463 + +1.3
3,409,464 - -0.2
3,409,543 - +0.6
3,409,819 + ynjH NOLOHH_17360 0.10 +0.2
3,410,279 - nudG NOLOHH_17365 0.61 -1.7
3,410,384 - nudG NOLOHH_17365 0.87 -2.4
3,410,441 + -0.2
3,410,505 + -0.3
3,410,506 - -2.3
3,410,507 + -0.6
3,410,507 + +0.0
3,410,614 + ynjF NOLOHH_17370 0.15 +0.1
3,410,799 + ynjF NOLOHH_17370 0.44 +0.5
3,410,799 + ynjF NOLOHH_17370 0.44 -0.1
3,410,957 + ynjF NOLOHH_17370 0.70 -0.8
3,410,957 + ynjF NOLOHH_17370 0.70 +0.7
3,410,970 + ynjF NOLOHH_17370 0.72 +0.0
3,411,007 + ynjF NOLOHH_17370 0.78 +0.4
3,411,007 + ynjF NOLOHH_17370 0.78 -0.1
3,411,160 + +0.0
3,411,270 + -1.1
3,411,274 + +0.3

Or see this region's nucleotide sequence