Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17175

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntinsQ and yeaQ are separated by 226 nucleotidesyeaQ and yoaJ are separated by 58 nucleotidesyoaJ and dgcP are separated by 133 nucleotides NOLOHH_17170: insQ - Putative RNA-guided DNA endonuclease InsQ, at 3,371,292 to 3,372,440 insQ NOLOHH_17175: yeaQ - UPF0410 protein YeaQ, at 3,372,667 to 3,372,915 yeaQ NOLOHH_17180: yoaJ - protein YoaJ, at 3,372,974 to 3,373,048 yoaJ NOLOHH_17185: dgcP - diguanylate cyclase DgcP, at 3,373,182 to 3,374,207 dgcP Position (kb) 3372 3373Strain fitness (log2 ratio) -2 -1 0 1at 3371.710 kb on - strand, within insQat 3372.521 kb on + strandat 3372.654 kb on - strandat 3372.762 kb on + strand, within yeaQat 3372.776 kb on + strand, within yeaQat 3372.825 kb on + strand, within yeaQat 3372.892 kb on - strandat 3372.920 kb on + strandat 3373.028 kb on - strand, within yoaJat 3373.111 kb on - strandat 3373.111 kb on - strandat 3373.369 kb on - strand, within dgcPat 3373.369 kb on - strand, within dgcPat 3373.369 kb on - strand, within dgcPat 3373.369 kb on - strand, within dgcPat 3373.383 kb on - strand, within dgcPat 3373.533 kb on - strand, within dgcPat 3373.533 kb on - strand, within dgcPat 3373.749 kb on - strand, within dgcPat 3373.844 kb on - strand, within dgcP

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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3,371,710 - insQ NOLOHH_17170 0.36 +0.1
3,372,521 + -0.6
3,372,654 - +0.7
3,372,762 + yeaQ NOLOHH_17175 0.38 +0.1
3,372,776 + yeaQ NOLOHH_17175 0.44 -2.1
3,372,825 + yeaQ NOLOHH_17175 0.63 -1.1
3,372,892 - +0.1
3,372,920 + -0.8
3,373,028 - yoaJ NOLOHH_17180 0.72 -0.2
3,373,111 - +1.1
3,373,111 - -1.1
3,373,369 - dgcP NOLOHH_17185 0.18 +0.7
3,373,369 - dgcP NOLOHH_17185 0.18 -0.8
3,373,369 - dgcP NOLOHH_17185 0.18 +0.6
3,373,369 - dgcP NOLOHH_17185 0.18 -0.2
3,373,383 - dgcP NOLOHH_17185 0.20 -0.7
3,373,533 - dgcP NOLOHH_17185 0.34 +0.1
3,373,533 - dgcP NOLOHH_17185 0.34 -0.3
3,373,749 - dgcP NOLOHH_17185 0.55 -1.4
3,373,844 - dgcP NOLOHH_17185 0.65 +1.5

Or see this region's nucleotide sequence