Strain Fitness in Escherichia coli ECOR27 around NOLOHH_15730

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntwcaM and NOLOHH_15730 are separated by 157 nucleotidesNOLOHH_15730 and galF are separated by 242 nucleotides NOLOHH_15725: wcaM - colanic acid biosynthesis protein WcaM, at 3,098,182 to 3,099,576 wcaM NOLOHH_15730: NOLOHH_15730 - N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase, at 3,099,734 to 3,100,729 _15730 NOLOHH_15735: galF - UTP--glucose-1-phosphate uridylyltransferase GalF, at 3,100,972 to 3,101,865 galF Position (kb) 3099 3100 3101Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3098.865 kb on - strand, within wcaMat 3098.865 kb on - strand, within wcaMat 3098.865 kb on - strand, within wcaMat 3098.880 kb on + strand, within wcaMat 3098.881 kb on - strand, within wcaMat 3098.884 kb on + strand, within wcaMat 3098.885 kb on - strand, within wcaMat 3098.885 kb on - strand, within wcaMat 3098.890 kb on - strand, within wcaMat 3098.890 kb on - strand, within wcaMat 3099.103 kb on - strand, within wcaMat 3099.282 kb on + strand, within wcaMat 3099.282 kb on + strand, within wcaMat 3099.283 kb on - strand, within wcaMat 3099.283 kb on - strand, within wcaMat 3099.430 kb on - strand, within wcaMat 3099.607 kb on + strandat 3099.607 kb on + strandat 3099.637 kb on + strandat 3099.637 kb on + strandat 3099.644 kb on + strandat 3099.693 kb on + strandat 3099.723 kb on + strandat 3099.927 kb on + strand, within NOLOHH_15730at 3099.927 kb on + strand, within NOLOHH_15730at 3099.927 kb on + strand, within NOLOHH_15730at 3099.930 kb on + strand, within NOLOHH_15730at 3099.957 kb on + strand, within NOLOHH_15730at 3099.977 kb on + strand, within NOLOHH_15730at 3100.042 kb on + strand, within NOLOHH_15730at 3100.051 kb on + strand, within NOLOHH_15730at 3100.138 kb on + strand, within NOLOHH_15730at 3100.138 kb on + strand, within NOLOHH_15730at 3100.138 kb on + strand, within NOLOHH_15730at 3100.172 kb on + strand, within NOLOHH_15730at 3100.253 kb on + strand, within NOLOHH_15730at 3100.253 kb on + strand, within NOLOHH_15730at 3100.255 kb on + strand, within NOLOHH_15730at 3100.288 kb on + strand, within NOLOHH_15730at 3100.288 kb on + strand, within NOLOHH_15730at 3100.313 kb on + strand, within NOLOHH_15730at 3100.313 kb on + strand, within NOLOHH_15730at 3100.313 kb on + strand, within NOLOHH_15730at 3100.313 kb on + strand, within NOLOHH_15730at 3100.313 kb on + strand, within NOLOHH_15730at 3100.315 kb on + strand, within NOLOHH_15730at 3100.315 kb on + strand, within NOLOHH_15730at 3100.328 kb on + strand, within NOLOHH_15730at 3100.358 kb on + strand, within NOLOHH_15730at 3100.396 kb on + strand, within NOLOHH_15730at 3100.477 kb on + strand, within NOLOHH_15730at 3100.477 kb on + strand, within NOLOHH_15730at 3100.525 kb on + strand, within NOLOHH_15730at 3100.540 kb on + strand, within NOLOHH_15730at 3100.645 kb on + strandat 3100.645 kb on + strandat 3100.645 kb on + strandat 3100.679 kb on + strandat 3100.710 kb on + strandat 3100.710 kb on + strandat 3100.710 kb on + strandat 3100.710 kb on + strandat 3100.786 kb on + strandat 3100.798 kb on + strandat 3100.889 kb on + strandat 3100.899 kb on + strandat 3100.899 kb on + strandat 3100.901 kb on + strandat 3100.901 kb on + strandat 3100.901 kb on + strandat 3100.901 kb on + strandat 3100.901 kb on + strandat 3100.903 kb on + strandat 3100.903 kb on + strandat 3101.019 kb on + strandat 3101.019 kb on + strandat 3101.019 kb on + strandat 3101.086 kb on + strand, within galFat 3101.182 kb on + strand, within galFat 3101.315 kb on + strand, within galFat 3101.315 kb on + strand, within galFat 3101.676 kb on + strand, within galF

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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3,098,865 - wcaM NOLOHH_15725 0.49 -2.1
3,098,865 - wcaM NOLOHH_15725 0.49 +0.4
3,098,865 - wcaM NOLOHH_15725 0.49 -0.1
3,098,880 + wcaM NOLOHH_15725 0.50 -0.6
3,098,881 - wcaM NOLOHH_15725 0.50 -2.1
3,098,884 + wcaM NOLOHH_15725 0.50 -1.0
3,098,885 - wcaM NOLOHH_15725 0.50 +0.2
3,098,885 - wcaM NOLOHH_15725 0.50 +1.0
3,098,890 - wcaM NOLOHH_15725 0.51 +0.9
3,098,890 - wcaM NOLOHH_15725 0.51 -0.7
3,099,103 - wcaM NOLOHH_15725 0.66 +0.1
3,099,282 + wcaM NOLOHH_15725 0.79 +0.3
3,099,282 + wcaM NOLOHH_15725 0.79 +1.3
3,099,283 - wcaM NOLOHH_15725 0.79 -0.6
3,099,283 - wcaM NOLOHH_15725 0.79 +0.0
3,099,430 - wcaM NOLOHH_15725 0.89 +0.9
3,099,607 + -1.1
3,099,607 + +0.3
3,099,637 + +0.3
3,099,637 + -1.2
3,099,644 + -0.4
3,099,693 + +0.1
3,099,723 + -3.8
3,099,927 + NOLOHH_15730 0.19 -3.0
3,099,927 + NOLOHH_15730 0.19 -4.2
3,099,927 + NOLOHH_15730 0.19 -1.5
3,099,930 + NOLOHH_15730 0.20 -2.9
3,099,957 + NOLOHH_15730 0.22 -4.0
3,099,977 + NOLOHH_15730 0.24 -3.9
3,100,042 + NOLOHH_15730 0.31 -5.5
3,100,051 + NOLOHH_15730 0.32 -4.7
3,100,138 + NOLOHH_15730 0.41 -4.4
3,100,138 + NOLOHH_15730 0.41 -4.2
3,100,138 + NOLOHH_15730 0.41 -4.4
3,100,172 + NOLOHH_15730 0.44 -2.1
3,100,253 + NOLOHH_15730 0.52 -3.9
3,100,253 + NOLOHH_15730 0.52 -4.5
3,100,255 + NOLOHH_15730 0.52 -3.6
3,100,288 + NOLOHH_15730 0.56 -0.5
3,100,288 + NOLOHH_15730 0.56 -3.7
3,100,313 + NOLOHH_15730 0.58 -4.2
3,100,313 + NOLOHH_15730 0.58 -2.4
3,100,313 + NOLOHH_15730 0.58 -0.2
3,100,313 + NOLOHH_15730 0.58 -4.1
3,100,313 + NOLOHH_15730 0.58 -1.1
3,100,315 + NOLOHH_15730 0.58 -4.1
3,100,315 + NOLOHH_15730 0.58 -1.9
3,100,328 + NOLOHH_15730 0.60 -5.4
3,100,358 + NOLOHH_15730 0.63 -2.1
3,100,396 + NOLOHH_15730 0.66 -2.8
3,100,477 + NOLOHH_15730 0.75 -4.6
3,100,477 + NOLOHH_15730 0.75 -0.5
3,100,525 + NOLOHH_15730 0.79 -4.2
3,100,540 + NOLOHH_15730 0.81 -2.6
3,100,645 + -3.2
3,100,645 + -3.8
3,100,645 + -2.9
3,100,679 + -2.3
3,100,710 + -5.1
3,100,710 + -4.3
3,100,710 + -5.0
3,100,710 + -1.4
3,100,786 + -0.3
3,100,798 + -0.2
3,100,889 + -1.5
3,100,899 + -0.0
3,100,899 + -0.4
3,100,901 + +0.2
3,100,901 + +0.2
3,100,901 + +0.5
3,100,901 + -0.2
3,100,901 + -1.6
3,100,903 + -0.2
3,100,903 + -0.8
3,101,019 + +2.1
3,101,019 + -0.5
3,101,019 + -1.7
3,101,086 + galF NOLOHH_15735 0.13 +0.3
3,101,182 + galF NOLOHH_15735 0.23 -0.3
3,101,315 + galF NOLOHH_15735 0.38 +1.1
3,101,315 + galF NOLOHH_15735 0.38 +1.1
3,101,676 + galF NOLOHH_15735 0.79 -1.8

Or see this region's nucleotide sequence