Strain Fitness in Escherichia coli ECOR27 around NOLOHH_15015

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfruB and fruB overlap by 1 nucleotidesfruB and fruA are separated by 16 nucleotides NOLOHH_15010: fruB - fused PTS fructose transporter subunit IIA/HPr protein, at 2,940,721 to 2,941,851 fruB NOLOHH_15015: fruB - fused PTS fructose transporter subunit IIA/HPr protein, at 2,941,851 to 2,942,789 fruB NOLOHH_15020: fruA - PTS fructose transporter subunit IIBC, at 2,942,806 to 2,944,497 fruA Position (kb) 2941 2942 2943Strain fitness (log2 ratio) -2 -1 0 1 2at 2940.891 kb on + strand, within fruBat 2940.953 kb on + strand, within fruBat 2941.000 kb on + strand, within fruBat 2941.465 kb on - strand, within fruBat 2941.644 kb on + strand, within fruBat 2941.659 kb on + strand, within fruBat 2941.659 kb on + strand, within fruBat 2941.746 kb on + strandat 2941.868 kb on + strandat 2941.868 kb on + strandat 2941.868 kb on + strandat 2941.868 kb on + strandat 2941.868 kb on + strandat 2941.890 kb on + strandat 2941.890 kb on + strandat 2941.890 kb on + strandat 2941.993 kb on + strand, within fruBat 2941.996 kb on + strand, within fruBat 2942.107 kb on + strand, within fruBat 2942.107 kb on + strand, within fruBat 2942.351 kb on + strand, within fruBat 2942.593 kb on + strand, within fruBat 2942.618 kb on + strand, within fruBat 2942.726 kb on + strandat 2942.773 kb on + strandat 2942.773 kb on + strandat 2942.783 kb on + strandat 2942.854 kb on + strandat 2942.854 kb on + strandat 2942.854 kb on + strandat 2942.854 kb on + strandat 2942.855 kb on - strandat 2942.855 kb on - strandat 2942.855 kb on - strandat 2942.856 kb on + strandat 2943.003 kb on + strand, within fruAat 2943.067 kb on + strand, within fruAat 2943.122 kb on + strand, within fruAat 2943.122 kb on + strand, within fruAat 2943.346 kb on + strand, within fruAat 2943.346 kb on + strand, within fruAat 2943.346 kb on + strand, within fruAat 2943.346 kb on + strand, within fruAat 2943.346 kb on + strand, within fruAat 2943.351 kb on + strand, within fruAat 2943.352 kb on - strand, within fruAat 2943.462 kb on + strand, within fruAat 2943.498 kb on - strand, within fruAat 2943.511 kb on + strand, within fruAat 2943.511 kb on + strand, within fruAat 2943.511 kb on + strand, within fruAat 2943.511 kb on + strand, within fruAat 2943.511 kb on + strand, within fruAat 2943.512 kb on - strand, within fruAat 2943.512 kb on - strand, within fruAat 2943.512 kb on - strand, within fruAat 2943.512 kb on - strand, within fruAat 2943.667 kb on + strand, within fruAat 2943.667 kb on + strand, within fruAat 2943.669 kb on + strand, within fruAat 2943.669 kb on + strand, within fruAat 2943.670 kb on - strand, within fruAat 2943.766 kb on - strand, within fruAat 2943.787 kb on + strand, within fruA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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2,940,891 + fruB NOLOHH_15010 0.15 +0.0
2,940,953 + fruB NOLOHH_15010 0.21 -0.6
2,941,000 + fruB NOLOHH_15010 0.25 -1.0
2,941,465 - fruB NOLOHH_15010 0.66 +1.4
2,941,644 + fruB NOLOHH_15010 0.82 -0.3
2,941,659 + fruB NOLOHH_15010 0.83 +0.5
2,941,659 + fruB NOLOHH_15010 0.83 -0.5
2,941,746 + -0.6
2,941,868 + -0.5
2,941,868 + -1.3
2,941,868 + -0.7
2,941,868 + +0.5
2,941,868 + -1.4
2,941,890 + -0.7
2,941,890 + +0.2
2,941,890 + -1.5
2,941,993 + fruB NOLOHH_15015 0.15 -0.0
2,941,996 + fruB NOLOHH_15015 0.15 -0.7
2,942,107 + fruB NOLOHH_15015 0.27 -1.1
2,942,107 + fruB NOLOHH_15015 0.27 +0.1
2,942,351 + fruB NOLOHH_15015 0.53 -0.7
2,942,593 + fruB NOLOHH_15015 0.79 -0.4
2,942,618 + fruB NOLOHH_15015 0.82 -0.2
2,942,726 + +1.7
2,942,773 + +1.0
2,942,773 + -0.0
2,942,783 + +0.7
2,942,854 + -0.1
2,942,854 + +0.6
2,942,854 + -1.1
2,942,854 + +0.3
2,942,855 - -0.2
2,942,855 - -1.1
2,942,855 - -0.2
2,942,856 + -0.6
2,943,003 + fruA NOLOHH_15020 0.12 -0.2
2,943,067 + fruA NOLOHH_15020 0.15 +0.9
2,943,122 + fruA NOLOHH_15020 0.19 +0.3
2,943,122 + fruA NOLOHH_15020 0.19 -0.4
2,943,346 + fruA NOLOHH_15020 0.32 -0.1
2,943,346 + fruA NOLOHH_15020 0.32 +0.1
2,943,346 + fruA NOLOHH_15020 0.32 +0.1
2,943,346 + fruA NOLOHH_15020 0.32 +0.4
2,943,346 + fruA NOLOHH_15020 0.32 -0.2
2,943,351 + fruA NOLOHH_15020 0.32 -0.8
2,943,352 - fruA NOLOHH_15020 0.32 -0.9
2,943,462 + fruA NOLOHH_15020 0.39 +0.2
2,943,498 - fruA NOLOHH_15020 0.41 -2.1
2,943,511 + fruA NOLOHH_15020 0.42 -0.1
2,943,511 + fruA NOLOHH_15020 0.42 +0.3
2,943,511 + fruA NOLOHH_15020 0.42 -2.1
2,943,511 + fruA NOLOHH_15020 0.42 -1.2
2,943,511 + fruA NOLOHH_15020 0.42 +0.4
2,943,512 - fruA NOLOHH_15020 0.42 +2.1
2,943,512 - fruA NOLOHH_15020 0.42 +0.2
2,943,512 - fruA NOLOHH_15020 0.42 +0.6
2,943,512 - fruA NOLOHH_15020 0.42 -0.8
2,943,667 + fruA NOLOHH_15020 0.51 +0.7
2,943,667 + fruA NOLOHH_15020 0.51 +0.1
2,943,669 + fruA NOLOHH_15020 0.51 +0.4
2,943,669 + fruA NOLOHH_15020 0.51 +0.2
2,943,670 - fruA NOLOHH_15020 0.51 +0.2
2,943,766 - fruA NOLOHH_15020 0.57 +1.2
2,943,787 + fruA NOLOHH_15020 0.58 -0.1

Or see this region's nucleotide sequence