Strain Fitness in Escherichia coli ECOR27 around NOLOHH_14410

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfcC and pta are separated by 231 nucleotidespta and ackA are separated by 74 nucleotides NOLOHH_14405: yfcC - putative basic amino acid antiporter YfcC, at 2,803,403 to 2,804,881 yfcC NOLOHH_14410: pta - phosphate acetyltransferase, at 2,805,113 to 2,807,257 pta NOLOHH_14415: ackA - acetate kinase, at 2,807,332 to 2,808,534 ackA Position (kb) 2805 2806 2807 2808Strain fitness (log2 ratio) -1 0 1 2at 2804.175 kb on + strand, within yfcCat 2804.334 kb on + strand, within yfcCat 2804.334 kb on + strand, within yfcCat 2804.335 kb on - strand, within yfcCat 2804.335 kb on - strand, within yfcCat 2804.335 kb on - strand, within yfcCat 2804.335 kb on - strand, within yfcCat 2804.335 kb on - strand, within yfcCat 2804.335 kb on - strand, within yfcCat 2804.335 kb on - strand, within yfcCat 2804.579 kb on - strand, within yfcCat 2804.579 kb on - strand, within yfcCat 2804.607 kb on + strand, within yfcCat 2804.607 kb on + strand, within yfcCat 2804.872 kb on + strandat 2804.923 kb on + strandat 2805.856 kb on - strand, within ptaat 2805.856 kb on - strand, within ptaat 2807.246 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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2,804,175 + yfcC NOLOHH_14405 0.52 +0.5
2,804,334 + yfcC NOLOHH_14405 0.63 -0.4
2,804,334 + yfcC NOLOHH_14405 0.63 +0.7
2,804,335 - yfcC NOLOHH_14405 0.63 +0.3
2,804,335 - yfcC NOLOHH_14405 0.63 -0.4
2,804,335 - yfcC NOLOHH_14405 0.63 +0.0
2,804,335 - yfcC NOLOHH_14405 0.63 +0.4
2,804,335 - yfcC NOLOHH_14405 0.63 +1.4
2,804,335 - yfcC NOLOHH_14405 0.63 +0.6
2,804,335 - yfcC NOLOHH_14405 0.63 -0.2
2,804,579 - yfcC NOLOHH_14405 0.80 -0.2
2,804,579 - yfcC NOLOHH_14405 0.80 +0.1
2,804,607 + yfcC NOLOHH_14405 0.81 -0.8
2,804,607 + yfcC NOLOHH_14405 0.81 +2.4
2,804,872 + -0.7
2,804,923 + -0.8
2,805,856 - pta NOLOHH_14410 0.35 +0.1
2,805,856 - pta NOLOHH_14410 0.35 -1.1
2,807,246 - +1.8

Or see this region's nucleotide sequence