Strain Fitness in Escherichia coli ECOR27 around NOLOHH_07565

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrfaB and rfaL are separated by 35 nucleotidesrfaL and rfaC overlap by 4 nucleotidesrfaC and rfaF are separated by 3 nucleotides NOLOHH_07560: rfaB - UDP-glucose--(glucosyl)LPS alpha-1,2-glucosyltransferase, at 1,437,550 to 1,438,692 rfaB NOLOHH_07565: rfaL - O-antigen ligase RfaL, at 1,438,728 to 1,439,936 rfaL NOLOHH_07570: rfaC - lipopolysaccharide heptosyltransferase RfaC, at 1,439,933 to 1,440,925 rfaC NOLOHH_07575: rfaF - ADP-heptose--LPS heptosyltransferase RfaF, at 1,440,929 to 1,441,975 rfaF Position (kb) 1438 1439 1440Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1437.870 kb on + strand, within rfaBat 1437.870 kb on + strand, within rfaBat 1437.883 kb on + strand, within rfaBat 1438.072 kb on + strand, within rfaBat 1438.114 kb on - strand, within rfaBat 1438.173 kb on - strand, within rfaBat 1438.230 kb on - strand, within rfaBat 1438.329 kb on + strand, within rfaBat 1438.366 kb on + strand, within rfaBat 1438.367 kb on - strand, within rfaBat 1438.470 kb on + strand, within rfaBat 1438.510 kb on - strand, within rfaBat 1438.533 kb on + strand, within rfaBat 1438.677 kb on + strandat 1438.846 kb on + strandat 1438.855 kb on + strand, within rfaLat 1438.906 kb on - strand, within rfaLat 1439.038 kb on + strand, within rfaLat 1439.048 kb on + strand, within rfaLat 1439.061 kb on - strand, within rfaLat 1439.098 kb on - strand, within rfaLat 1439.145 kb on - strand, within rfaLat 1439.236 kb on - strand, within rfaLat 1439.494 kb on + strand, within rfaLat 1439.495 kb on - strand, within rfaLat 1439.498 kb on - strand, within rfaLat 1439.608 kb on - strand, within rfaLat 1439.617 kb on - strand, within rfaLat 1439.624 kb on + strand, within rfaLat 1439.637 kb on - strand, within rfaLat 1439.823 kb on - strandat 1439.863 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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1,437,870 + rfaB NOLOHH_07560 0.28 -3.1
1,437,870 + rfaB NOLOHH_07560 0.28 -4.7
1,437,883 + rfaB NOLOHH_07560 0.29 -3.8
1,438,072 + rfaB NOLOHH_07560 0.46 -4.8
1,438,114 - rfaB NOLOHH_07560 0.49 -1.7
1,438,173 - rfaB NOLOHH_07560 0.55 -4.2
1,438,230 - rfaB NOLOHH_07560 0.59 -1.6
1,438,329 + rfaB NOLOHH_07560 0.68 -3.1
1,438,366 + rfaB NOLOHH_07560 0.71 -2.7
1,438,367 - rfaB NOLOHH_07560 0.71 -4.1
1,438,470 + rfaB NOLOHH_07560 0.80 -3.9
1,438,510 - rfaB NOLOHH_07560 0.84 -3.3
1,438,533 + rfaB NOLOHH_07560 0.86 -3.0
1,438,677 + +0.7
1,438,846 + -5.0
1,438,855 + rfaL NOLOHH_07565 0.11 -4.7
1,438,906 - rfaL NOLOHH_07565 0.15 -4.1
1,439,038 + rfaL NOLOHH_07565 0.26 -3.1
1,439,048 + rfaL NOLOHH_07565 0.26 -3.8
1,439,061 - rfaL NOLOHH_07565 0.28 -5.2
1,439,098 - rfaL NOLOHH_07565 0.31 -4.0
1,439,145 - rfaL NOLOHH_07565 0.34 -3.2
1,439,236 - rfaL NOLOHH_07565 0.42 -3.5
1,439,494 + rfaL NOLOHH_07565 0.63 -2.6
1,439,495 - rfaL NOLOHH_07565 0.63 -4.3
1,439,498 - rfaL NOLOHH_07565 0.64 -2.8
1,439,608 - rfaL NOLOHH_07565 0.73 -2.4
1,439,617 - rfaL NOLOHH_07565 0.74 -4.9
1,439,624 + rfaL NOLOHH_07565 0.74 -3.6
1,439,637 - rfaL NOLOHH_07565 0.75 -2.7
1,439,823 - -5.0
1,439,863 - -5.4

Or see this region's nucleotide sequence