Experiment: Bas37
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjbI and NOLOHH_05250 are separated by 57 nucleotides NOLOHH_05250 and NOLOHH_05255 are separated by 101 nucleotides NOLOHH_05255 and malM overlap by 26 nucleotides
NOLOHH_05245: yjbI - SopA family protein, at 966,323 to 967,651
yjbI
NOLOHH_05250: NOLOHH_05250 - Putative type III effector protein, at 967,709 to 967,903
_05250
NOLOHH_05255: NOLOHH_05255 - hypothetical protein, at 968,005 to 968,157
_05255
NOLOHH_05260: malM - maltose operon protein MalM, at 968,132 to 969,052
malM
Position (kb) 967
968 Strain fitness (log2 ratio) -2
-1
0
1 at 966.723 kb on - strand, within yjbI at 966.918 kb on - strand, within yjbI at 967.367 kb on - strand, within yjbI at 967.462 kb on + strand, within yjbI at 967.870 kb on + strand, within NOLOHH_05250 at 967.871 kb on - strand, within NOLOHH_05250 at 967.903 kb on + strand at 967.925 kb on + strand at 968.038 kb on + strand, within NOLOHH_05255 at 968.039 kb on - strand, within NOLOHH_05255 at 968.072 kb on + strand, within NOLOHH_05255 at 968.129 kb on + strand, within NOLOHH_05255 at 968.130 kb on - strand, within NOLOHH_05255 at 968.133 kb on + strand at 968.133 kb on + strand at 968.134 kb on - strand at 968.158 kb on + strand at 968.261 kb on - strand, within malM at 968.350 kb on + strand, within malM at 968.354 kb on + strand, within malM at 968.355 kb on - strand, within malM at 968.355 kb on - strand, within malM at 968.360 kb on - strand, within malM at 968.387 kb on + strand, within malM at 968.387 kb on + strand, within malM at 968.387 kb on + strand, within malM at 968.387 kb on + strand, within malM at 968.388 kb on - strand, within malM at 968.388 kb on - strand, within malM at 968.388 kb on - strand, within malM at 968.388 kb on - strand, within malM at 968.441 kb on + strand, within malM at 968.511 kb on + strand, within malM at 968.511 kb on + strand, within malM at 968.511 kb on + strand, within malM at 968.512 kb on - strand, within malM at 968.512 kb on - strand, within malM at 968.580 kb on + strand, within malM at 968.661 kb on + strand, within malM at 968.670 kb on + strand, within malM at 968.670 kb on + strand, within malM at 968.670 kb on + strand, within malM at 968.881 kb on + strand, within malM
Per-strain Table
Position Strand Gene LocusTag Fraction Bas37 remove 966,723 - yjbI NOLOHH_05245 0.30 +0.3 966,918 - yjbI NOLOHH_05245 0.45 -0.2 967,367 - yjbI NOLOHH_05245 0.79 -0.1 967,462 + yjbI NOLOHH_05245 0.86 -0.5 967,870 + NOLOHH_05250 0.83 -2.1 967,871 - NOLOHH_05250 0.83 -0.7 967,903 + +0.2 967,925 + -0.1 968,038 + NOLOHH_05255 0.22 +0.1 968,039 - NOLOHH_05255 0.22 -0.6 968,072 + NOLOHH_05255 0.44 -0.6 968,129 + NOLOHH_05255 0.81 +1.0 968,130 - NOLOHH_05255 0.82 +0.1 968,133 + +0.2 968,133 + +0.2 968,134 - +0.2 968,158 + +0.1 968,261 - malM NOLOHH_05260 0.14 -2.1 968,350 + malM NOLOHH_05260 0.24 +0.3 968,354 + malM NOLOHH_05260 0.24 -0.6 968,355 - malM NOLOHH_05260 0.24 +0.1 968,355 - malM NOLOHH_05260 0.24 +1.0 968,360 - malM NOLOHH_05260 0.25 -1.6 968,387 + malM NOLOHH_05260 0.28 -0.6 968,387 + malM NOLOHH_05260 0.28 +0.1 968,387 + malM NOLOHH_05260 0.28 +0.1 968,387 + malM NOLOHH_05260 0.28 +0.1 968,388 - malM NOLOHH_05260 0.28 -1.8 968,388 - malM NOLOHH_05260 0.28 -0.1 968,388 - malM NOLOHH_05260 0.28 +0.1 968,388 - malM NOLOHH_05260 0.28 +1.7 968,441 + malM NOLOHH_05260 0.34 +0.8 968,511 + malM NOLOHH_05260 0.41 +0.2 968,511 + malM NOLOHH_05260 0.41 -0.0 968,511 + malM NOLOHH_05260 0.41 +0.6 968,512 - malM NOLOHH_05260 0.41 +0.6 968,512 - malM NOLOHH_05260 0.41 +0.3 968,580 + malM NOLOHH_05260 0.49 -1.8 968,661 + malM NOLOHH_05260 0.57 -1.2 968,670 + malM NOLOHH_05260 0.58 +0.0 968,670 + malM NOLOHH_05260 0.58 -0.1 968,670 + malM NOLOHH_05260 0.58 +0.3 968,881 + malM NOLOHH_05260 0.81 -0.6
Or see this region's nucleotide sequence