Experiment: Bas37
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt frdA and frdB overlap by 8 nucleotides frdB and NOLOHH_04615 are separated by 10 nucleotides NOLOHH_04615 and frdD are separated by 10 nucleotides frdD and blaEC are separated by 62 nucleotides
NOLOHH_04605: frdA - fumarate reductase (quinol) flavoprotein subunit, at 836,023 to 837,831
frdA
NOLOHH_04610: frdB - fumarate reductase iron-sulfur protein, at 837,824 to 838,558
frdB
NOLOHH_04615: NOLOHH_04615 - Fumarate reductase subunit C, at 838,569 to 838,964
_04615
NOLOHH_04620: frdD - fumarate reductase subunit FrdD, at 838,975 to 839,334
frdD
NOLOHH_04625: blaEC - BlaEC family class C beta-lactamase, at 839,397 to 840,530
blaEC
Position (kb) 838
839 Strain fitness (log2 ratio) -1
0
1
2 at 837.576 kb on + strand, within frdA at 837.576 kb on + strand, within frdA at 837.600 kb on + strand, within frdA at 837.600 kb on + strand, within frdA at 837.600 kb on + strand, within frdA at 837.735 kb on + strand at 837.735 kb on + strand at 837.735 kb on + strand at 837.735 kb on + strand at 837.736 kb on - strand at 837.736 kb on - strand at 837.738 kb on + strand at 837.738 kb on + strand at 837.739 kb on - strand at 837.753 kb on + strand at 837.764 kb on - strand at 837.808 kb on - strand at 837.863 kb on + strand at 837.864 kb on - strand at 837.902 kb on + strand, within frdB at 837.902 kb on + strand, within frdB at 837.903 kb on - strand, within frdB at 837.903 kb on - strand, within frdB at 837.903 kb on - strand, within frdB at 837.903 kb on - strand, within frdB at 837.903 kb on - strand, within frdB at 837.915 kb on - strand, within frdB at 837.925 kb on + strand, within frdB at 837.926 kb on - strand, within frdB at 837.926 kb on - strand, within frdB at 837.926 kb on - strand, within frdB at 837.926 kb on - strand, within frdB at 837.926 kb on - strand, within frdB at 837.926 kb on - strand, within frdB at 837.926 kb on - strand, within frdB at 837.926 kb on - strand, within frdB at 837.950 kb on + strand, within frdB at 838.001 kb on - strand, within frdB at 838.057 kb on + strand, within frdB at 838.105 kb on - strand, within frdB at 838.108 kb on + strand, within frdB at 838.108 kb on + strand, within frdB at 838.108 kb on + strand, within frdB at 838.108 kb on + strand, within frdB at 838.109 kb on - strand, within frdB at 838.109 kb on - strand, within frdB at 838.181 kb on + strand, within frdB at 838.182 kb on - strand, within frdB at 838.182 kb on - strand, within frdB at 838.182 kb on - strand, within frdB at 838.182 kb on - strand, within frdB at 838.219 kb on + strand, within frdB at 838.220 kb on - strand, within frdB at 838.220 kb on - strand, within frdB at 838.250 kb on + strand, within frdB at 838.250 kb on + strand, within frdB at 838.251 kb on - strand, within frdB at 838.251 kb on - strand, within frdB at 838.251 kb on - strand, within frdB at 838.361 kb on + strand, within frdB at 838.400 kb on - strand, within frdB at 838.400 kb on - strand, within frdB at 838.439 kb on - strand, within frdB at 838.451 kb on + strand, within frdB at 838.584 kb on - strand at 838.590 kb on + strand at 838.590 kb on + strand at 838.590 kb on + strand at 838.590 kb on + strand at 838.590 kb on + strand at 838.591 kb on - strand at 838.594 kb on + strand at 838.594 kb on + strand at 838.595 kb on - strand at 838.595 kb on - strand at 838.595 kb on - strand at 838.645 kb on - strand, within NOLOHH_04615 at 838.645 kb on - strand, within NOLOHH_04615 at 838.856 kb on + strand, within NOLOHH_04615 at 838.856 kb on + strand, within NOLOHH_04615 at 838.864 kb on + strand, within NOLOHH_04615 at 838.864 kb on + strand, within NOLOHH_04615 at 838.957 kb on - strand at 839.040 kb on + strand, within frdD at 839.041 kb on - strand, within frdD at 839.056 kb on - strand, within frdD at 839.129 kb on - strand, within frdD at 839.129 kb on - strand, within frdD at 839.221 kb on - strand, within frdD at 839.326 kb on - strand at 839.332 kb on + strand at 839.332 kb on + strand at 839.332 kb on + strand at 839.332 kb on + strand at 839.333 kb on - strand at 839.333 kb on - strand at 839.333 kb on - strand at 839.396 kb on + strand at 839.396 kb on + strand at 839.396 kb on + strand at 839.396 kb on + strand at 839.396 kb on + strand at 839.396 kb on + strand at 839.397 kb on - strand at 839.397 kb on - strand at 839.397 kb on - strand at 839.397 kb on - strand at 839.397 kb on - strand at 839.397 kb on - strand at 839.425 kb on + strand at 839.425 kb on + strand at 839.426 kb on - strand at 839.429 kb on + strand at 839.429 kb on + strand at 839.502 kb on - strand at 839.504 kb on - strand at 839.552 kb on + strand, within blaEC at 839.552 kb on + strand, within blaEC at 839.559 kb on + strand, within blaEC at 839.559 kb on + strand, within blaEC at 839.560 kb on - strand, within blaEC at 839.562 kb on + strand, within blaEC at 839.562 kb on + strand, within blaEC at 839.562 kb on + strand, within blaEC at 839.562 kb on + strand, within blaEC at 839.563 kb on - strand, within blaEC at 839.563 kb on - strand, within blaEC at 839.563 kb on - strand, within blaEC at 839.629 kb on + strand, within blaEC at 839.629 kb on + strand, within blaEC at 839.630 kb on - strand, within blaEC at 839.630 kb on - strand, within blaEC at 839.698 kb on + strand, within blaEC at 839.732 kb on + strand, within blaEC at 839.761 kb on + strand, within blaEC at 839.761 kb on + strand, within blaEC at 839.761 kb on + strand, within blaEC at 839.761 kb on + strand, within blaEC at 839.762 kb on - strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.765 kb on - strand, within blaEC at 839.765 kb on - strand, within blaEC at 839.765 kb on - strand, within blaEC at 839.765 kb on - strand, within blaEC at 839.765 kb on - strand, within blaEC at 839.765 kb on - strand, within blaEC at 839.778 kb on + strand, within blaEC at 839.778 kb on + strand, within blaEC at 839.778 kb on + strand, within blaEC at 839.779 kb on - strand, within blaEC at 839.865 kb on - strand, within blaEC at 839.865 kb on - strand, within blaEC at 839.892 kb on + strand, within blaEC at 839.893 kb on - strand, within blaEC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas37 remove 837,576 + frdA NOLOHH_04605 0.86 -0.5 837,576 + frdA NOLOHH_04605 0.86 +0.4 837,600 + frdA NOLOHH_04605 0.87 -0.0 837,600 + frdA NOLOHH_04605 0.87 +0.1 837,600 + frdA NOLOHH_04605 0.87 -0.0 837,735 + +0.2 837,735 + -0.6 837,735 + -0.7 837,735 + -0.1 837,736 - -1.5 837,736 - +0.4 837,738 + +0.3 837,738 + -0.2 837,739 - +0.5 837,753 + +0.4 837,764 - -0.8 837,808 - -1.0 837,863 + +0.9 837,864 - +0.6 837,902 + frdB NOLOHH_04610 0.11 -1.0 837,902 + frdB NOLOHH_04610 0.11 -0.7 837,903 - frdB NOLOHH_04610 0.11 +0.1 837,903 - frdB NOLOHH_04610 0.11 +0.4 837,903 - frdB NOLOHH_04610 0.11 -0.1 837,903 - frdB NOLOHH_04610 0.11 +0.1 837,903 - frdB NOLOHH_04610 0.11 +0.8 837,915 - frdB NOLOHH_04610 0.12 +0.3 837,925 + frdB NOLOHH_04610 0.14 +0.3 837,926 - frdB NOLOHH_04610 0.14 +0.5 837,926 - frdB NOLOHH_04610 0.14 +0.1 837,926 - frdB NOLOHH_04610 0.14 -0.1 837,926 - frdB NOLOHH_04610 0.14 -0.0 837,926 - frdB NOLOHH_04610 0.14 +1.0 837,926 - frdB NOLOHH_04610 0.14 +0.0 837,926 - frdB NOLOHH_04610 0.14 +0.6 837,926 - frdB NOLOHH_04610 0.14 -0.7 837,950 + frdB NOLOHH_04610 0.17 -0.9 838,001 - frdB NOLOHH_04610 0.24 +0.2 838,057 + frdB NOLOHH_04610 0.32 +0.7 838,105 - frdB NOLOHH_04610 0.38 +0.5 838,108 + frdB NOLOHH_04610 0.39 -1.2 838,108 + frdB NOLOHH_04610 0.39 -0.0 838,108 + frdB NOLOHH_04610 0.39 -0.3 838,108 + frdB NOLOHH_04610 0.39 +2.1 838,109 - frdB NOLOHH_04610 0.39 -1.3 838,109 - frdB NOLOHH_04610 0.39 -0.6 838,181 + frdB NOLOHH_04610 0.49 +0.4 838,182 - frdB NOLOHH_04610 0.49 -0.5 838,182 - frdB NOLOHH_04610 0.49 +0.1 838,182 - frdB NOLOHH_04610 0.49 +0.7 838,182 - frdB NOLOHH_04610 0.49 -0.4 838,219 + frdB NOLOHH_04610 0.54 -0.4 838,220 - frdB NOLOHH_04610 0.54 -0.2 838,220 - frdB NOLOHH_04610 0.54 -1.7 838,250 + frdB NOLOHH_04610 0.58 -1.0 838,250 + frdB NOLOHH_04610 0.58 +0.1 838,251 - frdB NOLOHH_04610 0.58 -1.1 838,251 - frdB NOLOHH_04610 0.58 +0.8 838,251 - frdB NOLOHH_04610 0.58 -0.0 838,361 + frdB NOLOHH_04610 0.73 -1.0 838,400 - frdB NOLOHH_04610 0.78 +0.3 838,400 - frdB NOLOHH_04610 0.78 +1.1 838,439 - frdB NOLOHH_04610 0.84 -0.9 838,451 + frdB NOLOHH_04610 0.85 +0.5 838,584 - +0.2 838,590 + -0.3 838,590 + -1.0 838,590 + -0.9 838,590 + +0.5 838,590 + +0.2 838,591 - -0.2 838,594 + -1.3 838,594 + -1.6 838,595 - +2.4 838,595 - -0.3 838,595 - +0.4 838,645 - NOLOHH_04615 0.19 -0.3 838,645 - NOLOHH_04615 0.19 -1.3 838,856 + NOLOHH_04615 0.72 -0.2 838,856 + NOLOHH_04615 0.72 -1.5 838,864 + NOLOHH_04615 0.74 -1.2 838,864 + NOLOHH_04615 0.74 -0.3 838,957 - -0.1 839,040 + frdD NOLOHH_04620 0.18 -0.9 839,041 - frdD NOLOHH_04620 0.18 +0.4 839,056 - frdD NOLOHH_04620 0.23 +0.8 839,129 - frdD NOLOHH_04620 0.43 +0.6 839,129 - frdD NOLOHH_04620 0.43 +0.4 839,221 - frdD NOLOHH_04620 0.68 -0.1 839,326 - -0.3 839,332 + -0.2 839,332 + -0.9 839,332 + -0.1 839,332 + +0.2 839,333 - -0.4 839,333 - +0.7 839,333 - +0.0 839,396 + +0.5 839,396 + +1.9 839,396 + +0.3 839,396 + +0.3 839,396 + +0.6 839,396 + +1.6 839,397 - -0.3 839,397 - +0.6 839,397 - -0.7 839,397 - +0.3 839,397 - -0.6 839,397 - -0.4 839,425 + +0.2 839,425 + +2.7 839,426 - -1.3 839,429 + +0.5 839,429 + +0.3 839,502 - -0.5 839,504 - -0.1 839,552 + blaEC NOLOHH_04625 0.14 +0.3 839,552 + blaEC NOLOHH_04625 0.14 +1.0 839,559 + blaEC NOLOHH_04625 0.14 -0.0 839,559 + blaEC NOLOHH_04625 0.14 +0.6 839,560 - blaEC NOLOHH_04625 0.14 +0.4 839,562 + blaEC NOLOHH_04625 0.15 +0.7 839,562 + blaEC NOLOHH_04625 0.15 -0.1 839,562 + blaEC NOLOHH_04625 0.15 +0.1 839,562 + blaEC NOLOHH_04625 0.15 -0.3 839,563 - blaEC NOLOHH_04625 0.15 -0.6 839,563 - blaEC NOLOHH_04625 0.15 -0.2 839,563 - blaEC NOLOHH_04625 0.15 +0.8 839,629 + blaEC NOLOHH_04625 0.20 +0.1 839,629 + blaEC NOLOHH_04625 0.20 -0.3 839,630 - blaEC NOLOHH_04625 0.21 +0.2 839,630 - blaEC NOLOHH_04625 0.21 -0.7 839,698 + blaEC NOLOHH_04625 0.27 -0.2 839,732 + blaEC NOLOHH_04625 0.30 +0.2 839,761 + blaEC NOLOHH_04625 0.32 -0.3 839,761 + blaEC NOLOHH_04625 0.32 -1.4 839,761 + blaEC NOLOHH_04625 0.32 +0.2 839,761 + blaEC NOLOHH_04625 0.32 -1.3 839,762 - blaEC NOLOHH_04625 0.32 +0.2 839,764 + blaEC NOLOHH_04625 0.32 +0.5 839,764 + blaEC NOLOHH_04625 0.32 +0.4 839,764 + blaEC NOLOHH_04625 0.32 +0.3 839,764 + blaEC NOLOHH_04625 0.32 +0.8 839,764 + blaEC NOLOHH_04625 0.32 +0.0 839,764 + blaEC NOLOHH_04625 0.32 +1.1 839,764 + blaEC NOLOHH_04625 0.32 -0.1 839,764 + blaEC NOLOHH_04625 0.32 +0.7 839,764 + blaEC NOLOHH_04625 0.32 +0.2 839,765 - blaEC NOLOHH_04625 0.32 +0.2 839,765 - blaEC NOLOHH_04625 0.32 -0.0 839,765 - blaEC NOLOHH_04625 0.32 -0.1 839,765 - blaEC NOLOHH_04625 0.32 +0.4 839,765 - blaEC NOLOHH_04625 0.32 +0.5 839,765 - blaEC NOLOHH_04625 0.32 -0.4 839,778 + blaEC NOLOHH_04625 0.34 -0.2 839,778 + blaEC NOLOHH_04625 0.34 -0.9 839,778 + blaEC NOLOHH_04625 0.34 +0.0 839,779 - blaEC NOLOHH_04625 0.34 +0.6 839,865 - blaEC NOLOHH_04625 0.41 +0.2 839,865 - blaEC NOLOHH_04625 0.41 +0.1 839,892 + blaEC NOLOHH_04625 0.44 -0.3 839,893 - blaEC NOLOHH_04625 0.44 -0.3
Or see this region's nucleotide sequence