Experiment: Bas37
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt treB and treC are separated by 49 nucleotides treC and nrdD are separated by 393 nucleotides
NOLOHH_04160: treB - PTS trehalose transporter subunit IIBC, at 752,180 to 753,601
treB
NOLOHH_04165: treC - alpha,alpha-phosphotrehalase, at 753,651 to 755,306
treC
NOLOHH_04170: nrdD - anaerobic ribonucleoside-triphosphate reductase, at 755,700 to 757,838
nrdD
Position (kb) 753
754
755
756 Strain fitness (log2 ratio) -2
-1
0
1
2 at 752.687 kb on + strand, within treB at 752.688 kb on - strand, within treB at 752.701 kb on + strand, within treB at 752.702 kb on - strand, within treB at 752.795 kb on + strand, within treB at 752.795 kb on + strand, within treB at 752.795 kb on + strand, within treB at 752.926 kb on + strand, within treB at 752.938 kb on - strand, within treB at 752.945 kb on + strand, within treB at 752.946 kb on - strand, within treB at 752.946 kb on - strand, within treB at 752.952 kb on - strand, within treB at 753.117 kb on - strand, within treB at 753.141 kb on + strand, within treB at 753.250 kb on - strand, within treB at 753.257 kb on - strand, within treB at 753.345 kb on - strand, within treB at 753.345 kb on - strand, within treB at 753.363 kb on - strand, within treB at 753.453 kb on + strand, within treB at 753.491 kb on + strand at 753.491 kb on + strand at 753.492 kb on - strand at 753.501 kb on + strand at 753.502 kb on - strand at 753.502 kb on - strand at 753.543 kb on + strand at 753.543 kb on + strand at 753.544 kb on - strand at 753.544 kb on - strand at 753.544 kb on - strand at 753.556 kb on + strand at 753.556 kb on + strand at 753.557 kb on - strand at 753.560 kb on + strand at 753.649 kb on + strand at 753.656 kb on + strand at 753.657 kb on - strand at 753.690 kb on + strand at 753.700 kb on - strand at 753.700 kb on - strand at 753.745 kb on + strand at 753.816 kb on + strand at 753.817 kb on - strand, within treC at 753.817 kb on - strand, within treC at 753.817 kb on - strand, within treC at 753.817 kb on - strand, within treC at 753.817 kb on - strand, within treC at 753.850 kb on + strand, within treC at 753.850 kb on + strand, within treC at 753.859 kb on - strand, within treC at 753.859 kb on - strand, within treC at 753.938 kb on + strand, within treC at 753.965 kb on + strand, within treC at 753.965 kb on + strand, within treC at 753.965 kb on + strand, within treC at 753.965 kb on + strand, within treC at 753.966 kb on - strand, within treC at 753.966 kb on - strand, within treC at 754.029 kb on + strand, within treC at 754.030 kb on - strand, within treC at 754.030 kb on - strand, within treC at 754.128 kb on + strand, within treC at 754.128 kb on + strand, within treC at 754.129 kb on - strand, within treC at 754.475 kb on + strand, within treC at 754.616 kb on + strand, within treC at 754.638 kb on - strand, within treC at 754.725 kb on + strand, within treC at 754.725 kb on + strand, within treC at 754.726 kb on - strand, within treC at 754.726 kb on - strand, within treC at 754.727 kb on + strand, within treC at 754.727 kb on + strand, within treC at 754.727 kb on + strand, within treC at 754.808 kb on + strand, within treC at 755.107 kb on + strand, within treC at 755.228 kb on + strand at 755.229 kb on - strand at 755.232 kb on + strand at 755.409 kb on + strand at 755.409 kb on + strand at 755.410 kb on - strand at 755.497 kb on - strand at 755.498 kb on + strand at 755.498 kb on + strand at 755.500 kb on + strand at 755.502 kb on + strand at 755.556 kb on + strand at 755.559 kb on + strand at 755.559 kb on + strand at 755.560 kb on - strand at 755.682 kb on + strand at 755.688 kb on + strand at 755.689 kb on - strand at 755.919 kb on + strand, within nrdD at 755.940 kb on + strand, within nrdD at 755.940 kb on + strand, within nrdD at 755.940 kb on + strand, within nrdD at 755.940 kb on + strand, within nrdD at 755.940 kb on + strand, within nrdD at 755.940 kb on + strand, within nrdD at 755.940 kb on + strand, within nrdD at 755.940 kb on + strand, within nrdD at 755.941 kb on - strand, within nrdD at 756.117 kb on + strand, within nrdD at 756.117 kb on + strand, within nrdD at 756.117 kb on + strand, within nrdD at 756.118 kb on - strand, within nrdD at 756.180 kb on + strand, within nrdD at 756.195 kb on + strand, within nrdD at 756.264 kb on - strand, within nrdD
Per-strain Table
Position Strand Gene LocusTag Fraction Bas37 remove 752,687 + treB NOLOHH_04160 0.36 -0.1 752,688 - treB NOLOHH_04160 0.36 -0.0 752,701 + treB NOLOHH_04160 0.37 +1.3 752,702 - treB NOLOHH_04160 0.37 +1.6 752,795 + treB NOLOHH_04160 0.43 -0.1 752,795 + treB NOLOHH_04160 0.43 +0.3 752,795 + treB NOLOHH_04160 0.43 -0.2 752,926 + treB NOLOHH_04160 0.52 +0.5 752,938 - treB NOLOHH_04160 0.53 +1.5 752,945 + treB NOLOHH_04160 0.54 +0.3 752,946 - treB NOLOHH_04160 0.54 +0.3 752,946 - treB NOLOHH_04160 0.54 -0.2 752,952 - treB NOLOHH_04160 0.54 -0.6 753,117 - treB NOLOHH_04160 0.66 -0.8 753,141 + treB NOLOHH_04160 0.68 +0.5 753,250 - treB NOLOHH_04160 0.75 -0.2 753,257 - treB NOLOHH_04160 0.76 +0.3 753,345 - treB NOLOHH_04160 0.82 +0.2 753,345 - treB NOLOHH_04160 0.82 +0.7 753,363 - treB NOLOHH_04160 0.83 +0.2 753,453 + treB NOLOHH_04160 0.90 +1.1 753,491 + +0.6 753,491 + -0.0 753,492 - -0.4 753,501 + +0.5 753,502 - -1.4 753,502 - -0.9 753,543 + +0.5 753,543 + +0.2 753,544 - -0.3 753,544 - +0.0 753,544 - +0.2 753,556 + -0.2 753,556 + -0.0 753,557 - -0.5 753,560 + -0.5 753,649 + -2.3 753,656 + -0.9 753,657 - +0.1 753,690 + +0.4 753,700 - -0.8 753,700 - +1.1 753,745 + -0.7 753,816 + +0.9 753,817 - treC NOLOHH_04165 0.10 +0.7 753,817 - treC NOLOHH_04165 0.10 -1.2 753,817 - treC NOLOHH_04165 0.10 +0.5 753,817 - treC NOLOHH_04165 0.10 +1.4 753,817 - treC NOLOHH_04165 0.10 -1.2 753,850 + treC NOLOHH_04165 0.12 -0.3 753,850 + treC NOLOHH_04165 0.12 +0.1 753,859 - treC NOLOHH_04165 0.13 +1.3 753,859 - treC NOLOHH_04165 0.13 +0.2 753,938 + treC NOLOHH_04165 0.17 +0.9 753,965 + treC NOLOHH_04165 0.19 +0.6 753,965 + treC NOLOHH_04165 0.19 -0.9 753,965 + treC NOLOHH_04165 0.19 -1.9 753,965 + treC NOLOHH_04165 0.19 -1.5 753,966 - treC NOLOHH_04165 0.19 +0.1 753,966 - treC NOLOHH_04165 0.19 -0.9 754,029 + treC NOLOHH_04165 0.23 -1.3 754,030 - treC NOLOHH_04165 0.23 -0.9 754,030 - treC NOLOHH_04165 0.23 +0.3 754,128 + treC NOLOHH_04165 0.29 -1.2 754,128 + treC NOLOHH_04165 0.29 +0.6 754,129 - treC NOLOHH_04165 0.29 -0.7 754,475 + treC NOLOHH_04165 0.50 -1.0 754,616 + treC NOLOHH_04165 0.58 -0.9 754,638 - treC NOLOHH_04165 0.60 -0.2 754,725 + treC NOLOHH_04165 0.65 -0.0 754,725 + treC NOLOHH_04165 0.65 +2.1 754,726 - treC NOLOHH_04165 0.65 -0.2 754,726 - treC NOLOHH_04165 0.65 +0.7 754,727 + treC NOLOHH_04165 0.65 +0.8 754,727 + treC NOLOHH_04165 0.65 +0.4 754,727 + treC NOLOHH_04165 0.65 -0.3 754,808 + treC NOLOHH_04165 0.70 +0.1 755,107 + treC NOLOHH_04165 0.88 +1.9 755,228 + -0.5 755,229 - +1.7 755,232 + -1.2 755,409 + +0.2 755,409 + +0.4 755,410 - +0.5 755,497 - -1.1 755,498 + -0.5 755,498 + +1.0 755,500 + -1.4 755,502 + +0.3 755,556 + -0.0 755,559 + +0.2 755,559 + +0.4 755,560 - +0.0 755,682 + -0.4 755,688 + +0.7 755,689 - +0.6 755,919 + nrdD NOLOHH_04170 0.10 +0.5 755,940 + nrdD NOLOHH_04170 0.11 -0.8 755,940 + nrdD NOLOHH_04170 0.11 -1.3 755,940 + nrdD NOLOHH_04170 0.11 +1.1 755,940 + nrdD NOLOHH_04170 0.11 +0.8 755,940 + nrdD NOLOHH_04170 0.11 -0.2 755,940 + nrdD NOLOHH_04170 0.11 -0.3 755,940 + nrdD NOLOHH_04170 0.11 -0.6 755,940 + nrdD NOLOHH_04170 0.11 -0.5 755,941 - nrdD NOLOHH_04170 0.11 +0.2 756,117 + nrdD NOLOHH_04170 0.19 -0.2 756,117 + nrdD NOLOHH_04170 0.19 +0.0 756,117 + nrdD NOLOHH_04170 0.19 +0.0 756,118 - nrdD NOLOHH_04170 0.20 -0.8 756,180 + nrdD NOLOHH_04170 0.22 +0.9 756,195 + nrdD NOLOHH_04170 0.23 +0.4 756,264 - nrdD NOLOHH_04170 0.26 -0.0
Or see this region's nucleotide sequence