Experiment: Bas37
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tssA and hcp1,tssD1 are separated by 23 nucleotides hcp1,tssD1 and yafU are separated by 43 nucleotides yafU and ykfM are separated by 9 nucleotides ykfM and yafT are separated by 136 nucleotides
NOLOHH_02280: tssA - Type VI secretion system protein TssA, at 367,376 to 368,728
tssA
NOLOHH_02285: hcp1,tssD1 - type VI secretion system protein, Hcp family, at 368,752 to 369,234
hcp1,tssD1
NOLOHH_02290: yafU - Putative inner membrane protein YafU, at 369,278 to 370,192
yafU
NOLOHH_02295: ykfM - Uncharacterized protein YkfM, at 370,202 to 370,681
ykfM
NOLOHH_02300: yafT - Uncharacterized lipoprotein YafT, at 370,818 to 371,603
yafT
Position (kb) 369
370
371 Strain fitness (log2 ratio) -1
0
1
2 at 368.278 kb on + strand, within tssA at 368.278 kb on + strand, within tssA at 368.290 kb on - strand, within tssA at 368.451 kb on + strand, within tssA at 368.451 kb on + strand, within tssA at 368.451 kb on + strand, within tssA at 368.451 kb on + strand, within tssA at 368.451 kb on + strand, within tssA at 368.452 kb on - strand, within tssA at 368.452 kb on - strand, within tssA at 368.452 kb on - strand, within tssA at 368.452 kb on - strand, within tssA at 368.452 kb on - strand, within tssA at 368.452 kb on - strand, within tssA at 368.452 kb on - strand, within tssA at 368.507 kb on + strand, within tssA at 368.508 kb on - strand, within tssA at 368.508 kb on - strand, within tssA at 368.636 kb on - strand at 368.636 kb on - strand at 368.768 kb on - strand at 368.768 kb on - strand at 368.798 kb on + strand at 369.168 kb on + strand, within hcp1,tssD1 at 369.183 kb on + strand, within hcp1,tssD1 at 369.210 kb on + strand at 369.373 kb on - strand, within yafU at 369.390 kb on - strand, within yafU at 369.545 kb on - strand, within yafU at 369.671 kb on + strand, within yafU at 369.921 kb on + strand, within yafU at 370.163 kb on + strand at 370.189 kb on - strand at 370.816 kb on + strand at 370.871 kb on + strand at 370.898 kb on + strand, within yafT at 370.946 kb on + strand, within yafT at 370.948 kb on + strand, within yafT at 370.954 kb on + strand, within yafT at 371.070 kb on + strand, within yafT
Per-strain Table
Position Strand Gene LocusTag Fraction Bas37 remove 368,278 + tssA NOLOHH_02280 0.67 +0.0 368,278 + tssA NOLOHH_02280 0.67 +0.4 368,290 - tssA NOLOHH_02280 0.68 -0.9 368,451 + tssA NOLOHH_02280 0.79 -0.5 368,451 + tssA NOLOHH_02280 0.79 +0.5 368,451 + tssA NOLOHH_02280 0.79 +1.0 368,451 + tssA NOLOHH_02280 0.79 +0.6 368,451 + tssA NOLOHH_02280 0.79 -0.8 368,452 - tssA NOLOHH_02280 0.80 +0.3 368,452 - tssA NOLOHH_02280 0.80 -0.0 368,452 - tssA NOLOHH_02280 0.80 -0.3 368,452 - tssA NOLOHH_02280 0.80 -0.1 368,452 - tssA NOLOHH_02280 0.80 -1.2 368,452 - tssA NOLOHH_02280 0.80 +0.9 368,452 - tssA NOLOHH_02280 0.80 +0.1 368,507 + tssA NOLOHH_02280 0.84 +0.4 368,508 - tssA NOLOHH_02280 0.84 +0.0 368,508 - tssA NOLOHH_02280 0.84 +0.2 368,636 - -0.0 368,636 - -0.5 368,768 - -1.5 368,768 - -0.5 368,798 + +0.7 369,168 + hcp1,tssD1 NOLOHH_02285 0.86 -1.6 369,183 + hcp1,tssD1 NOLOHH_02285 0.89 +2.0 369,210 + -0.5 369,373 - yafU NOLOHH_02290 0.10 -0.8 369,390 - yafU NOLOHH_02290 0.12 -0.4 369,545 - yafU NOLOHH_02290 0.29 -0.6 369,671 + yafU NOLOHH_02290 0.43 -1.2 369,921 + yafU NOLOHH_02290 0.70 -0.4 370,163 + +0.7 370,189 - -0.2 370,816 + -0.0 370,871 + +0.3 370,898 + yafT NOLOHH_02300 0.10 +1.7 370,946 + yafT NOLOHH_02300 0.16 -0.8 370,948 + yafT NOLOHH_02300 0.17 +0.5 370,954 + yafT NOLOHH_02300 0.17 +0.0 371,070 + yafT NOLOHH_02300 0.32 -0.7
Or see this region's nucleotide sequence