Experiment: Bas37
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ivy and yafV are separated by 180 nucleotides yafV and tnp-ISAs1 are separated by 41 nucleotides tnp-ISAs1 and yncI are separated by 575 nucleotides yncI and yncI are separated by 48 nucleotides
NOLOHH_02160: ivy - Ivy family C-type lysozyme inhibitor, at 337,621 to 338,067
ivy
NOLOHH_02165: yafV - 2-oxoglutaramate amidase, at 338,248 to 339,018
yafV
NOLOHH_02170: tnp-ISAs1 - ISAs1 family transposase, at 339,060 to 340,103
tnp-ISAs1
NOLOHH_02175: yncI - ISAs1 family transposase, at 340,679 to 340,906
yncI
NOLOHH_02180: yncI - ISAs1 family transposase, at 340,955 to 341,425
yncI
Position (kb) 339
340
341 Strain fitness (log2 ratio) -2
-1
0
1 at 338.062 kb on - strand at 338.097 kb on + strand at 338.097 kb on + strand at 338.097 kb on + strand at 338.098 kb on - strand at 338.098 kb on - strand at 338.098 kb on - strand at 338.101 kb on - strand at 338.108 kb on + strand at 338.108 kb on + strand at 338.108 kb on + strand at 338.109 kb on - strand at 338.109 kb on - strand at 338.129 kb on + strand at 338.129 kb on + strand at 338.130 kb on - strand at 338.145 kb on + strand at 338.185 kb on + strand at 338.185 kb on + strand at 338.209 kb on + strand at 338.209 kb on + strand at 338.216 kb on - strand at 338.232 kb on - strand at 338.243 kb on - strand at 338.243 kb on - strand at 338.243 kb on - strand at 338.265 kb on + strand at 338.340 kb on + strand, within yafV at 338.340 kb on + strand, within yafV at 338.432 kb on + strand, within yafV at 338.432 kb on + strand, within yafV at 338.432 kb on + strand, within yafV at 338.432 kb on + strand, within yafV at 338.432 kb on + strand, within yafV at 338.433 kb on - strand, within yafV at 338.433 kb on - strand, within yafV at 338.433 kb on - strand, within yafV at 338.452 kb on - strand, within yafV at 338.496 kb on - strand, within yafV at 338.553 kb on - strand, within yafV at 338.560 kb on + strand, within yafV at 338.600 kb on + strand, within yafV at 338.600 kb on + strand, within yafV at 338.600 kb on + strand, within yafV at 338.600 kb on + strand, within yafV at 338.600 kb on + strand, within yafV at 338.600 kb on + strand, within yafV at 338.601 kb on - strand, within yafV at 338.601 kb on - strand, within yafV at 338.601 kb on - strand, within yafV at 338.606 kb on - strand, within yafV at 338.607 kb on + strand, within yafV at 338.608 kb on - strand, within yafV at 338.608 kb on - strand, within yafV at 338.671 kb on + strand, within yafV at 338.678 kb on + strand, within yafV at 338.728 kb on + strand, within yafV at 338.728 kb on + strand, within yafV at 338.728 kb on + strand, within yafV at 338.728 kb on + strand, within yafV at 338.729 kb on - strand, within yafV at 338.729 kb on - strand, within yafV at 338.729 kb on - strand, within yafV at 338.806 kb on + strand, within yafV at 338.807 kb on - strand, within yafV at 338.807 kb on - strand, within yafV at 338.878 kb on - strand, within yafV at 338.967 kb on + strand at 338.967 kb on + strand at 339.007 kb on - strand at 339.007 kb on - strand at 339.007 kb on - strand at 339.034 kb on - strand at 339.129 kb on - strand at 339.129 kb on - strand at 339.129 kb on - strand at 339.347 kb on - strand, within tnp-ISAs1 at 340.456 kb on + strand at 340.551 kb on + strand at 340.577 kb on + strand at 340.640 kb on - strand at 340.821 kb on - strand, within yncI at 341.103 kb on - strand, within yncI
Per-strain Table
Position Strand Gene LocusTag Fraction Bas37 remove 338,062 - -0.3 338,097 + +0.8 338,097 + -0.8 338,097 + +1.1 338,098 - -0.3 338,098 - +0.4 338,098 - -1.1 338,101 - -0.1 338,108 + +0.2 338,108 + +0.3 338,108 + +0.1 338,109 - -0.2 338,109 - -0.0 338,129 + +0.0 338,129 + -0.3 338,130 - +0.1 338,145 + -0.3 338,185 + -1.6 338,185 + +0.9 338,209 + +0.5 338,209 + -0.3 338,216 - +0.6 338,232 - +0.5 338,243 - +0.2 338,243 - -0.1 338,243 - -0.3 338,265 + +0.2 338,340 + yafV NOLOHH_02165 0.12 -0.2 338,340 + yafV NOLOHH_02165 0.12 +0.3 338,432 + yafV NOLOHH_02165 0.24 -0.1 338,432 + yafV NOLOHH_02165 0.24 -1.1 338,432 + yafV NOLOHH_02165 0.24 -0.1 338,432 + yafV NOLOHH_02165 0.24 -1.1 338,432 + yafV NOLOHH_02165 0.24 -1.3 338,433 - yafV NOLOHH_02165 0.24 +0.7 338,433 - yafV NOLOHH_02165 0.24 +0.7 338,433 - yafV NOLOHH_02165 0.24 -1.1 338,452 - yafV NOLOHH_02165 0.26 -1.9 338,496 - yafV NOLOHH_02165 0.32 -0.4 338,553 - yafV NOLOHH_02165 0.40 +1.0 338,560 + yafV NOLOHH_02165 0.40 -0.5 338,600 + yafV NOLOHH_02165 0.46 -1.0 338,600 + yafV NOLOHH_02165 0.46 -0.4 338,600 + yafV NOLOHH_02165 0.46 -0.4 338,600 + yafV NOLOHH_02165 0.46 +0.3 338,600 + yafV NOLOHH_02165 0.46 -0.9 338,600 + yafV NOLOHH_02165 0.46 -1.0 338,601 - yafV NOLOHH_02165 0.46 +0.0 338,601 - yafV NOLOHH_02165 0.46 +0.1 338,601 - yafV NOLOHH_02165 0.46 -1.3 338,606 - yafV NOLOHH_02165 0.46 -0.9 338,607 + yafV NOLOHH_02165 0.47 +0.4 338,608 - yafV NOLOHH_02165 0.47 -0.5 338,608 - yafV NOLOHH_02165 0.47 -0.2 338,671 + yafV NOLOHH_02165 0.55 +0.2 338,678 + yafV NOLOHH_02165 0.56 +0.5 338,728 + yafV NOLOHH_02165 0.62 -0.5 338,728 + yafV NOLOHH_02165 0.62 -0.4 338,728 + yafV NOLOHH_02165 0.62 +0.0 338,728 + yafV NOLOHH_02165 0.62 +0.4 338,729 - yafV NOLOHH_02165 0.62 +1.6 338,729 - yafV NOLOHH_02165 0.62 -0.3 338,729 - yafV NOLOHH_02165 0.62 -0.5 338,806 + yafV NOLOHH_02165 0.72 +0.3 338,807 - yafV NOLOHH_02165 0.73 +0.1 338,807 - yafV NOLOHH_02165 0.73 +0.5 338,878 - yafV NOLOHH_02165 0.82 +0.7 338,967 + -0.8 338,967 + +0.6 339,007 - +0.0 339,007 - +0.2 339,007 - -0.6 339,034 - -0.6 339,129 - +0.5 339,129 - -0.4 339,129 - -0.4 339,347 - tnp-ISAs1 NOLOHH_02170 0.27 -0.7 340,456 + +0.2 340,551 + +0.7 340,577 + +0.2 340,640 - -2.3 340,821 - yncI NOLOHH_02175 0.62 -0.1 341,103 - yncI NOLOHH_02180 0.31 +0.6
Or see this region's nucleotide sequence