Strain Fitness in Escherichia coli ECOR27 around NOLOHH_01935

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrclA and rclC are separated by 356 nucleotidesrclC and aRA1 are separated by 159 nucleotides NOLOHH_01930: rclA - reactive chlorine resistance oxidoreductase RclA, at 290,293 to 291,618 rclA NOLOHH_01935: rclC - reactive chlorine species resistance protein RclC, at 291,975 to 292,568 rclC NOLOHH_01940: aRA1 - aldo/keto reductase, at 292,728 to 293,597 aRA1 Position (kb) 291 292 293Strain fitness (log2 ratio) -1 0 1 2 3at 291.033 kb on - strand, within rclAat 291.035 kb on + strand, within rclAat 291.035 kb on + strand, within rclAat 291.035 kb on + strand, within rclAat 291.036 kb on - strand, within rclAat 291.069 kb on - strand, within rclAat 291.131 kb on + strand, within rclAat 291.131 kb on + strand, within rclAat 291.132 kb on - strand, within rclAat 291.135 kb on + strand, within rclAat 291.150 kb on + strand, within rclAat 291.193 kb on + strand, within rclAat 291.193 kb on + strand, within rclAat 291.194 kb on - strand, within rclAat 291.194 kb on - strand, within rclAat 291.194 kb on - strand, within rclAat 291.194 kb on - strand, within rclAat 291.194 kb on - strand, within rclAat 291.197 kb on + strand, within rclAat 291.197 kb on + strand, within rclAat 291.198 kb on - strand, within rclAat 291.198 kb on - strand, within rclAat 291.198 kb on - strand, within rclAat 291.198 kb on - strand, within rclAat 291.198 kb on - strand, within rclAat 291.198 kb on - strand, within rclAat 291.198 kb on - strand, within rclAat 291.221 kb on + strand, within rclAat 291.222 kb on - strand, within rclAat 291.252 kb on + strand, within rclAat 291.252 kb on + strand, within rclAat 291.253 kb on - strand, within rclAat 291.255 kb on + strand, within rclAat 291.288 kb on - strand, within rclAat 291.291 kb on + strand, within rclAat 291.291 kb on + strand, within rclAat 291.561 kb on - strandat 291.691 kb on + strandat 291.876 kb on - strandat 292.229 kb on + strand, within rclCat 292.318 kb on + strand, within rclCat 292.642 kb on - strandat 292.716 kb on - strandat 293.057 kb on - strand, within aRA1at 293.059 kb on + strand, within aRA1at 293.060 kb on - strand, within aRA1at 293.096 kb on - strand, within aRA1at 293.269 kb on - strand, within aRA1at 293.273 kb on - strand, within aRA1at 293.290 kb on - strand, within aRA1at 293.375 kb on + strand, within aRA1at 293.397 kb on + strand, within aRA1at 293.398 kb on - strand, within aRA1at 293.398 kb on - strand, within aRA1at 293.410 kb on - strand, within aRA1at 293.412 kb on - strand, within aRA1at 293.412 kb on - strand, within aRA1

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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291,033 - rclA NOLOHH_01930 0.56 +0.0
291,035 + rclA NOLOHH_01930 0.56 +0.6
291,035 + rclA NOLOHH_01930 0.56 +0.0
291,035 + rclA NOLOHH_01930 0.56 -0.6
291,036 - rclA NOLOHH_01930 0.56 +0.2
291,069 - rclA NOLOHH_01930 0.59 -0.4
291,131 + rclA NOLOHH_01930 0.63 -0.5
291,131 + rclA NOLOHH_01930 0.63 -0.6
291,132 - rclA NOLOHH_01930 0.63 -0.3
291,135 + rclA NOLOHH_01930 0.63 +1.6
291,150 + rclA NOLOHH_01930 0.65 +0.0
291,193 + rclA NOLOHH_01930 0.68 +0.6
291,193 + rclA NOLOHH_01930 0.68 -0.3
291,194 - rclA NOLOHH_01930 0.68 +0.2
291,194 - rclA NOLOHH_01930 0.68 +0.4
291,194 - rclA NOLOHH_01930 0.68 -0.4
291,194 - rclA NOLOHH_01930 0.68 -0.2
291,194 - rclA NOLOHH_01930 0.68 +0.2
291,197 + rclA NOLOHH_01930 0.68 +0.2
291,197 + rclA NOLOHH_01930 0.68 +0.1
291,198 - rclA NOLOHH_01930 0.68 +0.2
291,198 - rclA NOLOHH_01930 0.68 -1.1
291,198 - rclA NOLOHH_01930 0.68 +0.6
291,198 - rclA NOLOHH_01930 0.68 -0.1
291,198 - rclA NOLOHH_01930 0.68 +0.2
291,198 - rclA NOLOHH_01930 0.68 +0.1
291,198 - rclA NOLOHH_01930 0.68 -0.0
291,221 + rclA NOLOHH_01930 0.70 -1.5
291,222 - rclA NOLOHH_01930 0.70 +0.4
291,252 + rclA NOLOHH_01930 0.72 -0.1
291,252 + rclA NOLOHH_01930 0.72 -0.2
291,253 - rclA NOLOHH_01930 0.72 +0.9
291,255 + rclA NOLOHH_01930 0.73 +0.2
291,288 - rclA NOLOHH_01930 0.75 +0.2
291,291 + rclA NOLOHH_01930 0.75 +0.4
291,291 + rclA NOLOHH_01930 0.75 -0.8
291,561 - -1.1
291,691 + -0.3
291,876 - +0.7
292,229 + rclC NOLOHH_01935 0.43 -0.7
292,318 + rclC NOLOHH_01935 0.58 -0.7
292,642 - -0.7
292,716 - +0.8
293,057 - aRA1 NOLOHH_01940 0.38 +0.1
293,059 + aRA1 NOLOHH_01940 0.38 +3.5
293,060 - aRA1 NOLOHH_01940 0.38 +0.7
293,096 - aRA1 NOLOHH_01940 0.42 -0.2
293,269 - aRA1 NOLOHH_01940 0.62 +1.0
293,273 - aRA1 NOLOHH_01940 0.63 -1.1
293,290 - aRA1 NOLOHH_01940 0.65 -0.6
293,375 + aRA1 NOLOHH_01940 0.74 -0.1
293,397 + aRA1 NOLOHH_01940 0.77 +0.2
293,398 - aRA1 NOLOHH_01940 0.77 +1.6
293,398 - aRA1 NOLOHH_01940 0.77 +0.2
293,410 - aRA1 NOLOHH_01940 0.78 +1.0
293,412 - aRA1 NOLOHH_01940 0.79 +0.2
293,412 - aRA1 NOLOHH_01940 0.79 +0.9

Or see this region's nucleotide sequence