Strain Fitness in Escherichia coli ECOR27 around NOLOHH_01380

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyajO and pgpA are separated by 53 nucleotidespgpA and thiL overlap by 23 nucleotides NOLOHH_01375: yajO - 1-deoxyxylulose-5-phosphate synthase YajO, at 167,946 to 168,920 yajO NOLOHH_01380: pgpA - phosphatidylglycerophosphatase A, at 168,974 to 169,492 pgpA NOLOHH_01385: thiL - thiamine-phosphate kinase, at 169,470 to 170,447 thiL Position (kb) 168 169 170Strain fitness (log2 ratio) -2 -1 0 1 2at 168.005 kb on + strandat 168.005 kb on + strandat 168.006 kb on - strandat 168.006 kb on - strandat 168.078 kb on - strand, within yajOat 168.122 kb on + strand, within yajOat 168.122 kb on + strand, within yajOat 168.123 kb on - strand, within yajOat 168.126 kb on + strand, within yajOat 168.127 kb on - strand, within yajOat 168.303 kb on + strand, within yajOat 168.303 kb on + strand, within yajOat 168.304 kb on - strand, within yajOat 168.304 kb on - strand, within yajOat 168.336 kb on + strand, within yajOat 168.383 kb on - strand, within yajOat 168.402 kb on + strand, within yajOat 168.404 kb on + strand, within yajOat 168.405 kb on - strand, within yajOat 168.488 kb on + strand, within yajOat 168.502 kb on - strand, within yajOat 168.666 kb on - strand, within yajOat 168.801 kb on - strand, within yajOat 168.801 kb on - strand, within yajOat 168.801 kb on - strand, within yajOat 168.914 kb on + strandat 168.919 kb on - strandat 168.976 kb on - strandat 169.015 kb on - strandat 169.121 kb on - strand, within pgpAat 169.208 kb on - strand, within pgpAat 169.345 kb on - strand, within pgpAat 170.448 kb on - strandat 170.467 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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168,005 + +0.9
168,005 + +0.5
168,006 - +0.2
168,006 - -0.1
168,078 - yajO NOLOHH_01375 0.14 -1.9
168,122 + yajO NOLOHH_01375 0.18 +0.3
168,122 + yajO NOLOHH_01375 0.18 +0.2
168,123 - yajO NOLOHH_01375 0.18 +0.2
168,126 + yajO NOLOHH_01375 0.18 -0.5
168,127 - yajO NOLOHH_01375 0.19 +0.6
168,303 + yajO NOLOHH_01375 0.37 +1.9
168,303 + yajO NOLOHH_01375 0.37 +0.6
168,304 - yajO NOLOHH_01375 0.37 -1.0
168,304 - yajO NOLOHH_01375 0.37 -0.6
168,336 + yajO NOLOHH_01375 0.40 +1.1
168,383 - yajO NOLOHH_01375 0.45 -0.0
168,402 + yajO NOLOHH_01375 0.47 -0.1
168,404 + yajO NOLOHH_01375 0.47 +0.6
168,405 - yajO NOLOHH_01375 0.47 -1.1
168,488 + yajO NOLOHH_01375 0.56 +0.4
168,502 - yajO NOLOHH_01375 0.57 -1.4
168,666 - yajO NOLOHH_01375 0.74 -0.5
168,801 - yajO NOLOHH_01375 0.88 +0.0
168,801 - yajO NOLOHH_01375 0.88 -0.7
168,801 - yajO NOLOHH_01375 0.88 +0.4
168,914 + +0.1
168,919 - -2.4
168,976 - +0.6
169,015 - -0.3
169,121 - pgpA NOLOHH_01380 0.28 -1.1
169,208 - pgpA NOLOHH_01380 0.45 +2.5
169,345 - pgpA NOLOHH_01380 0.71 -0.6
170,448 - -2.3
170,467 - -0.4

Or see this region's nucleotide sequence