Experiment: Bas37
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt acrB and tomB are separated by 545 nucleotides tomB and tomB are separated by 25 nucleotides tomB and maa are separated by 170 nucleotides
NOLOHH_01140: acrB - efflux RND transporter permease AcrB, at 119,532 to 122,681
acrB
NOLOHH_01145: tomB - Hha toxicity modulator TomB, at 123,227 to 123,601
tomB
NOLOHH_01150: tomB - Hha toxicity modulator TomB, at 123,627 to 123,845
tomB
NOLOHH_01155: maa - maltose O-acetyltransferase, at 124,016 to 124,567
maa
Position (kb) 123
124 Strain fitness (log2 ratio) -2
-1
0
1 at 122.307 kb on + strand, within acrB at 122.317 kb on + strand, within acrB at 122.363 kb on + strand, within acrB at 122.489 kb on + strand at 122.543 kb on + strand at 122.551 kb on + strand at 122.648 kb on + strand at 122.663 kb on + strand at 122.663 kb on + strand at 122.698 kb on + strand at 122.750 kb on - strand at 122.750 kb on - strand at 122.777 kb on - strand at 122.789 kb on - strand at 122.832 kb on - strand at 122.832 kb on - strand at 122.839 kb on - strand at 122.842 kb on - strand at 122.845 kb on + strand at 122.861 kb on - strand at 122.895 kb on + strand at 122.931 kb on - strand at 122.959 kb on - strand at 123.043 kb on + strand at 123.044 kb on - strand at 123.129 kb on - strand at 123.129 kb on - strand at 123.129 kb on - strand at 123.130 kb on + strand at 123.130 kb on + strand at 123.134 kb on + strand at 123.135 kb on - strand at 123.139 kb on + strand at 123.139 kb on + strand at 123.199 kb on - strand at 123.237 kb on - strand at 123.268 kb on + strand, within tomB at 123.268 kb on + strand, within tomB at 123.406 kb on + strand, within tomB at 123.478 kb on + strand, within tomB at 123.478 kb on + strand, within tomB at 123.490 kb on + strand, within tomB at 123.494 kb on + strand, within tomB at 123.502 kb on + strand, within tomB at 123.502 kb on + strand, within tomB at 123.502 kb on + strand, within tomB at 123.505 kb on + strand, within tomB at 123.626 kb on + strand at 123.719 kb on + strand, within tomB at 123.730 kb on + strand, within tomB at 123.802 kb on + strand, within tomB at 123.802 kb on + strand, within tomB at 123.804 kb on + strand, within tomB at 123.850 kb on + strand at 123.867 kb on + strand at 123.916 kb on - strand at 123.944 kb on + strand at 123.978 kb on + strand at 124.078 kb on - strand, within maa at 124.108 kb on + strand, within maa at 124.149 kb on + strand, within maa at 124.197 kb on - strand, within maa at 124.197 kb on - strand, within maa at 124.197 kb on - strand, within maa at 124.197 kb on - strand, within maa at 124.198 kb on + strand, within maa at 124.199 kb on - strand, within maa at 124.220 kb on + strand, within maa at 124.229 kb on + strand, within maa at 124.230 kb on - strand, within maa at 124.309 kb on + strand, within maa at 124.309 kb on + strand, within maa at 124.315 kb on + strand, within maa at 124.316 kb on - strand, within maa at 124.316 kb on - strand, within maa at 124.336 kb on + strand, within maa at 124.337 kb on - strand, within maa at 124.340 kb on + strand, within maa at 124.340 kb on + strand, within maa at 124.375 kb on + strand, within maa at 124.376 kb on - strand, within maa at 124.376 kb on - strand, within maa at 124.376 kb on - strand, within maa
Per-strain Table
Position Strand Gene LocusTag Fraction Bas37 remove 122,307 + acrB NOLOHH_01140 0.88 +0.9 122,317 + acrB NOLOHH_01140 0.88 +0.1 122,363 + acrB NOLOHH_01140 0.90 +0.8 122,489 + +0.8 122,543 + +0.1 122,551 + -0.4 122,648 + +0.5 122,663 + +0.3 122,663 + +0.7 122,698 + -0.8 122,750 - -0.2 122,750 - +0.3 122,777 - +0.5 122,789 - -0.1 122,832 - -0.5 122,832 - -0.6 122,839 - -0.0 122,842 - -0.1 122,845 + -1.3 122,861 - +0.5 122,895 + +1.6 122,931 - -0.7 122,959 - -1.6 123,043 + -0.4 123,044 - -0.1 123,129 - +0.0 123,129 - -0.0 123,129 - -0.8 123,130 + -1.7 123,130 + +0.7 123,134 + +0.4 123,135 - -0.2 123,139 + -0.6 123,139 + +0.0 123,199 - -0.2 123,237 - +0.3 123,268 + tomB NOLOHH_01145 0.11 -1.6 123,268 + tomB NOLOHH_01145 0.11 -1.9 123,406 + tomB NOLOHH_01145 0.48 -0.3 123,478 + tomB NOLOHH_01145 0.67 -0.6 123,478 + tomB NOLOHH_01145 0.67 -0.9 123,490 + tomB NOLOHH_01145 0.70 -0.4 123,494 + tomB NOLOHH_01145 0.71 +0.5 123,502 + tomB NOLOHH_01145 0.73 -0.8 123,502 + tomB NOLOHH_01145 0.73 -0.8 123,502 + tomB NOLOHH_01145 0.73 -0.4 123,505 + tomB NOLOHH_01145 0.74 -0.5 123,626 + +0.9 123,719 + tomB NOLOHH_01150 0.42 -0.0 123,730 + tomB NOLOHH_01150 0.47 +0.7 123,802 + tomB NOLOHH_01150 0.80 +0.7 123,802 + tomB NOLOHH_01150 0.80 +0.4 123,804 + tomB NOLOHH_01150 0.81 -0.4 123,850 + +0.0 123,867 + +0.6 123,916 - -1.2 123,944 + +0.3 123,978 + -0.1 124,078 - maa NOLOHH_01155 0.11 -2.1 124,108 + maa NOLOHH_01155 0.17 -0.4 124,149 + maa NOLOHH_01155 0.24 +0.4 124,197 - maa NOLOHH_01155 0.33 +0.5 124,197 - maa NOLOHH_01155 0.33 -0.4 124,197 - maa NOLOHH_01155 0.33 +0.4 124,197 - maa NOLOHH_01155 0.33 -0.4 124,198 + maa NOLOHH_01155 0.33 +1.3 124,199 - maa NOLOHH_01155 0.33 +0.6 124,220 + maa NOLOHH_01155 0.37 +0.2 124,229 + maa NOLOHH_01155 0.39 +0.5 124,230 - maa NOLOHH_01155 0.39 -0.2 124,309 + maa NOLOHH_01155 0.53 +0.1 124,309 + maa NOLOHH_01155 0.53 +0.4 124,315 + maa NOLOHH_01155 0.54 -0.2 124,316 - maa NOLOHH_01155 0.54 -0.6 124,316 - maa NOLOHH_01155 0.54 +0.5 124,336 + maa NOLOHH_01155 0.58 +0.5 124,337 - maa NOLOHH_01155 0.58 -0.1 124,340 + maa NOLOHH_01155 0.59 +0.1 124,340 + maa NOLOHH_01155 0.59 -0.8 124,375 + maa NOLOHH_01155 0.65 -0.1 124,376 - maa NOLOHH_01155 0.65 -0.4 124,376 - maa NOLOHH_01155 0.65 +0.7 124,376 - maa NOLOHH_01155 0.65 -1.3
Or see this region's nucleotide sequence