Experiment: Bas37
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimD and NOLOHH_00780 are separated by 14 nucleotides NOLOHH_00780 and fimC are separated by 30 nucleotides fimC and fimA are separated by 219 nucleotides
NOLOHH_00775: fimD - Outer membrane usher protein FimD/PapC, at 40,796 to 42,655
fimD
NOLOHH_00780: NOLOHH_00780 - Usher protein, at 42,670 to 43,404
_00780
NOLOHH_00785: fimC - type 1 fimbria chaperone FimC, at 43,435 to 44,127
fimC
NOLOHH_00790: fimA - type 1 fimbrial major subunit FimA, at 44,347 to 44,889
fimA
Position (kb) 43
44
45 Strain fitness (log2 ratio) -1
0
1 at 42.445 kb on + strand, within fimD at 42.446 kb on - strand, within fimD at 42.487 kb on + strand at 42.578 kb on - strand at 42.578 kb on - strand at 42.629 kb on - strand at 42.832 kb on - strand, within NOLOHH_00780 at 42.866 kb on - strand, within NOLOHH_00780 at 42.905 kb on + strand, within NOLOHH_00780 at 42.905 kb on + strand, within NOLOHH_00780 at 43.389 kb on + strand at 43.441 kb on + strand at 43.924 kb on + strand, within fimC at 44.238 kb on + strand at 44.299 kb on + strand at 44.299 kb on + strand at 44.300 kb on - strand at 44.310 kb on - strand at 44.362 kb on - strand at 44.829 kb on - strand, within fimA at 44.829 kb on - strand, within fimA at 44.931 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas37 remove 42,445 + fimD NOLOHH_00775 0.89 +1.1 42,446 - fimD NOLOHH_00775 0.89 +0.3 42,487 + +0.5 42,578 - -0.4 42,578 - +0.4 42,629 - -0.3 42,832 - NOLOHH_00780 0.22 +0.2 42,866 - NOLOHH_00780 0.27 -0.9 42,905 + NOLOHH_00780 0.32 +0.3 42,905 + NOLOHH_00780 0.32 +0.5 43,389 + -0.2 43,441 + +0.7 43,924 + fimC NOLOHH_00785 0.71 -0.6 44,238 + -0.5 44,299 + -0.2 44,299 + +0.1 44,300 - -1.3 44,310 - +0.8 44,362 - +0.0 44,829 - fimA NOLOHH_00790 0.89 +0.1 44,829 - fimA NOLOHH_00790 0.89 -0.5 44,931 - -0.6
Or see this region's nucleotide sequence