Strain Fitness in Escherichia coli ECOR27 around NOLOHH_00565

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_00560 and NOLOHH_00565 overlap by 4 nucleotidesNOLOHH_00565 and gpA1 overlap by 4 nucleotides NOLOHH_00560: NOLOHH_00560 - phage portal protein, at 14,024 to 15,625 _00560 NOLOHH_00565: NOLOHH_00565 - Lambda prophage-derived head-to-tail joining protein W, at 15,622 to 15,828 _00565 NOLOHH_00570: gpA1 - terminase, at 15,825 to 17,750 gpA1 Position (kb) 15 16Strain fitness (log2 ratio) -1 0 1 2at 15.769 kb on - strand, within NOLOHH_00565at 16.406 kb on - strand, within gpA1at 16.406 kb on - strand, within gpA1at 16.406 kb on - strand, within gpA1at 16.406 kb on - strand, within gpA1at 16.568 kb on - strand, within gpA1

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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15,769 - NOLOHH_00565 0.71 -0.6
16,406 - gpA1 NOLOHH_00570 0.30 -1.4
16,406 - gpA1 NOLOHH_00570 0.30 +1.4
16,406 - gpA1 NOLOHH_00570 0.30 +1.8
16,406 - gpA1 NOLOHH_00570 0.30 +0.1
16,568 - gpA1 NOLOHH_00570 0.39 -0.8

Or see this region's nucleotide sequence