Experiment: Bas37
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_00270 and NOLOHH_00275 are separated by 229 nucleotides NOLOHH_00275 and NOLOHH_00280 overlap by 4 nucleotides NOLOHH_00280 and NOLOHH_00285 are separated by 61 nucleotides NOLOHH_00285 and NOLOHH_00290 are separated by 13 nucleotides
NOLOHH_00270: NOLOHH_00270 - Endonuclease, at 4,351 to 4,842
_00270
NOLOHH_00275: NOLOHH_00275 - Conjugal transfer protein, at 5,072 to 5,377
_00275
NOLOHH_00280: NOLOHH_00280 - hypothetical protein, at 5,374 to 5,622
_00280
NOLOHH_00285: NOLOHH_00285 - cag pathogenicity island Cag12 family protein, at 5,684 to 6,220
_00285
NOLOHH_00290: NOLOHH_00290 - conjugal transfer protein TraG, at 6,234 to 8,066
_00290
Position (kb) 5
6
7 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4.700 kb on + strand, within NOLOHH_00270 at 4.700 kb on + strand, within NOLOHH_00270 at 4.762 kb on - strand, within NOLOHH_00270 at 4.895 kb on + strand at 4.899 kb on - strand at 4.914 kb on - strand at 4.931 kb on - strand at 4.940 kb on - strand at 4.944 kb on + strand at 4.948 kb on + strand at 4.950 kb on + strand at 4.994 kb on + strand at 4.994 kb on + strand at 4.995 kb on - strand at 5.114 kb on - strand, within NOLOHH_00275 at 5.114 kb on - strand, within NOLOHH_00275 at 5.262 kb on - strand, within NOLOHH_00275 at 5.270 kb on - strand, within NOLOHH_00275 at 5.283 kb on - strand, within NOLOHH_00275 at 5.283 kb on - strand, within NOLOHH_00275 at 5.330 kb on - strand, within NOLOHH_00275 at 5.404 kb on - strand, within NOLOHH_00280 at 5.659 kb on + strand at 5.659 kb on + strand at 5.660 kb on - strand at 5.723 kb on - strand at 5.847 kb on + strand, within NOLOHH_00285 at 6.303 kb on - strand at 6.394 kb on + strand at 6.543 kb on - strand, within NOLOHH_00290 at 6.551 kb on + strand, within NOLOHH_00290 at 6.552 kb on - strand, within NOLOHH_00290 at 6.582 kb on - strand, within NOLOHH_00290 at 6.590 kb on + strand, within NOLOHH_00290 at 6.598 kb on - strand, within NOLOHH_00290 at 6.643 kb on + strand, within NOLOHH_00290 at 6.643 kb on + strand, within NOLOHH_00290 at 6.708 kb on - strand, within NOLOHH_00290 at 6.791 kb on + strand, within NOLOHH_00290 at 6.793 kb on + strand, within NOLOHH_00290 at 6.985 kb on - strand, within NOLOHH_00290 at 7.099 kb on + strand, within NOLOHH_00290 at 7.170 kb on + strand, within NOLOHH_00290 at 7.170 kb on + strand, within NOLOHH_00290
Per-strain Table
Position Strand Gene LocusTag Fraction Bas37 remove 4,700 + NOLOHH_00270 0.71 +0.8 4,700 + NOLOHH_00270 0.71 +0.2 4,762 - NOLOHH_00270 0.84 -0.0 4,895 + -0.1 4,899 - -0.3 4,914 - -0.9 4,931 - +0.6 4,940 - -2.3 4,944 + -0.2 4,948 + -0.4 4,950 + -0.1 4,994 + +0.2 4,994 + +0.6 4,995 - +0.3 5,114 - NOLOHH_00275 0.14 +0.2 5,114 - NOLOHH_00275 0.14 +0.8 5,262 - NOLOHH_00275 0.62 -0.0 5,270 - NOLOHH_00275 0.65 -0.1 5,283 - NOLOHH_00275 0.69 -0.4 5,283 - NOLOHH_00275 0.69 -0.2 5,330 - NOLOHH_00275 0.84 -0.2 5,404 - NOLOHH_00280 0.12 +0.1 5,659 + -0.4 5,659 + +0.1 5,660 - +0.3 5,723 - -3.8 5,847 + NOLOHH_00285 0.30 -0.8 6,303 - -0.4 6,394 + -0.0 6,543 - NOLOHH_00290 0.17 -0.9 6,551 + NOLOHH_00290 0.17 +0.4 6,552 - NOLOHH_00290 0.17 -0.8 6,582 - NOLOHH_00290 0.19 -1.0 6,590 + NOLOHH_00290 0.19 +0.2 6,598 - NOLOHH_00290 0.20 -2.2 6,643 + NOLOHH_00290 0.22 +0.5 6,643 + NOLOHH_00290 0.22 +0.1 6,708 - NOLOHH_00290 0.26 +0.5 6,791 + NOLOHH_00290 0.30 +0.2 6,793 + NOLOHH_00290 0.30 +0.2 6,985 - NOLOHH_00290 0.41 +0.3 7,099 + NOLOHH_00290 0.47 +0.1 7,170 + NOLOHH_00290 0.51 +0.8 7,170 + NOLOHH_00290 0.51 +0.5
Or see this region's nucleotide sequence