Experiment: D-Mannose 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS17080 and ABI39_RS17085 are separated by 12 nucleotides ABI39_RS17085 and ABI39_RS17090 are separated by 59 nucleotides ABI39_RS17090 and ABI39_RS17095 are separated by 236 nucleotides
ABI39_RS17080: ABI39_RS17080 - DMT family transporter, at 4,326,928 to 4,327,836
_RS17080
ABI39_RS17085: ABI39_RS17085 - sugar O-acetyltransferase, at 4,327,849 to 4,328,400
_RS17085
ABI39_RS17090: ABI39_RS17090 - winged helix-turn-helix domain-containing protein, at 4,328,460 to 4,328,678
_RS17090
ABI39_RS17095: ABI39_RS17095 - type I methionyl aminopeptidase, at 4,328,915 to 4,329,769
_RS17095
Position (kb) 4327
4328
4329 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4326.857 kb on - strand at 4326.866 kb on - strand at 4326.908 kb on + strand at 4326.911 kb on + strand at 4326.922 kb on + strand at 4327.012 kb on - strand at 4327.170 kb on + strand, within ABI39_RS17080 at 4327.171 kb on - strand, within ABI39_RS17080 at 4327.175 kb on - strand, within ABI39_RS17080 at 4327.212 kb on - strand, within ABI39_RS17080 at 4327.236 kb on - strand, within ABI39_RS17080 at 4327.433 kb on - strand, within ABI39_RS17080 at 4327.470 kb on + strand, within ABI39_RS17080 at 4327.643 kb on + strand, within ABI39_RS17080 at 4327.742 kb on + strand, within ABI39_RS17080 at 4327.789 kb on + strand at 4327.844 kb on + strand at 4327.849 kb on - strand at 4327.859 kb on + strand at 4327.966 kb on + strand, within ABI39_RS17085 at 4327.966 kb on + strand, within ABI39_RS17085 at 4328.124 kb on + strand, within ABI39_RS17085 at 4328.142 kb on + strand, within ABI39_RS17085 at 4328.151 kb on - strand, within ABI39_RS17085 at 4328.162 kb on + strand, within ABI39_RS17085 at 4328.170 kb on + strand, within ABI39_RS17085 at 4328.171 kb on - strand, within ABI39_RS17085 at 4328.171 kb on - strand, within ABI39_RS17085 at 4328.195 kb on - strand, within ABI39_RS17085 at 4328.228 kb on - strand, within ABI39_RS17085 at 4328.271 kb on + strand, within ABI39_RS17085 at 4328.307 kb on + strand, within ABI39_RS17085 at 4328.364 kb on - strand at 4328.444 kb on - strand at 4328.445 kb on - strand at 4328.550 kb on + strand, within ABI39_RS17090 at 4328.553 kb on - strand, within ABI39_RS17090 at 4328.553 kb on - strand, within ABI39_RS17090 at 4328.596 kb on - strand, within ABI39_RS17090 at 4328.619 kb on - strand, within ABI39_RS17090 at 4329.090 kb on + strand, within ABI39_RS17095 at 4329.090 kb on + strand, within ABI39_RS17095 at 4329.099 kb on + strand, within ABI39_RS17095 at 4329.147 kb on + strand, within ABI39_RS17095 at 4329.147 kb on + strand, within ABI39_RS17095 at 4329.259 kb on + strand, within ABI39_RS17095 at 4329.307 kb on + strand, within ABI39_RS17095 at 4329.346 kb on + strand, within ABI39_RS17095 at 4329.346 kb on + strand, within ABI39_RS17095
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 2.5 mg/ml (C) remove 4,326,857 - -1.0 4,326,866 - -0.9 4,326,908 + +0.3 4,326,911 + +0.1 4,326,922 + +0.4 4,327,012 - -0.5 4,327,170 + ABI39_RS17080 0.27 -0.7 4,327,171 - ABI39_RS17080 0.27 +1.9 4,327,175 - ABI39_RS17080 0.27 -0.1 4,327,212 - ABI39_RS17080 0.31 -0.9 4,327,236 - ABI39_RS17080 0.34 +0.7 4,327,433 - ABI39_RS17080 0.56 +0.8 4,327,470 + ABI39_RS17080 0.60 +0.7 4,327,643 + ABI39_RS17080 0.79 -0.5 4,327,742 + ABI39_RS17080 0.90 -0.4 4,327,789 + -0.4 4,327,844 + +0.7 4,327,849 - -0.1 4,327,859 + +0.4 4,327,966 + ABI39_RS17085 0.21 -0.0 4,327,966 + ABI39_RS17085 0.21 -0.1 4,328,124 + ABI39_RS17085 0.50 -0.9 4,328,142 + ABI39_RS17085 0.53 +1.0 4,328,151 - ABI39_RS17085 0.55 -0.7 4,328,162 + ABI39_RS17085 0.57 +0.7 4,328,170 + ABI39_RS17085 0.58 +0.4 4,328,171 - ABI39_RS17085 0.58 +0.9 4,328,171 - ABI39_RS17085 0.58 -0.4 4,328,195 - ABI39_RS17085 0.63 -0.4 4,328,228 - ABI39_RS17085 0.69 -0.2 4,328,271 + ABI39_RS17085 0.76 +0.3 4,328,307 + ABI39_RS17085 0.83 +0.3 4,328,364 - -3.0 4,328,444 - +0.2 4,328,445 - +0.4 4,328,550 + ABI39_RS17090 0.41 +0.2 4,328,553 - ABI39_RS17090 0.42 +0.3 4,328,553 - ABI39_RS17090 0.42 -0.5 4,328,596 - ABI39_RS17090 0.62 -0.7 4,328,619 - ABI39_RS17090 0.73 -0.3 4,329,090 + ABI39_RS17095 0.20 -0.2 4,329,090 + ABI39_RS17095 0.20 +0.4 4,329,099 + ABI39_RS17095 0.22 +0.4 4,329,147 + ABI39_RS17095 0.27 -0.4 4,329,147 + ABI39_RS17095 0.27 -0.4 4,329,259 + ABI39_RS17095 0.40 +0.5 4,329,307 + ABI39_RS17095 0.46 +1.3 4,329,346 + ABI39_RS17095 0.50 -1.1 4,329,346 + ABI39_RS17095 0.50 -0.9
Or see this region's nucleotide sequence