Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS13955

Experiment: D-Mannose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Mannose 2.5 mg/ml (C)
3,628,903	-		ABI39_RS13950	0.66	-1.0
3,628,912	-		ABI39_RS13950	0.67	+0.5
3,628,912	-		ABI39_RS13950	0.67	-0.6
3,628,939	-		ABI39_RS13950	0.68	-0.1
3,628,939	-		ABI39_RS13950	0.68	+0.3
3,628,942	-		ABI39_RS13950	0.68	+0.2
3,628,959	+		ABI39_RS13950	0.68	+0.9
3,628,970	+		ABI39_RS13950	0.69	+0.4
3,628,971	-		ABI39_RS13950	0.69	+0.0
3,628,971	-		ABI39_RS13950	0.69	+0.0
3,628,971	-		ABI39_RS13950	0.69	+0.0
3,629,075	-		ABI39_RS13950	0.73	+0.5
3,629,094	+		ABI39_RS13950	0.73	-1.6
3,629,094	+		ABI39_RS13950	0.73	-1.1
3,629,094	+		ABI39_RS13950	0.73	-0.1
3,629,129	+		ABI39_RS13950	0.75	-0.8
3,629,129	+		ABI39_RS13950	0.75	-0.0
3,629,142	-		ABI39_RS13950	0.75	-0.0
3,629,152	+		ABI39_RS13950	0.75	-0.1
3,629,152	+		ABI39_RS13950	0.75	-0.8
3,629,157	+		ABI39_RS13950	0.76	+0.3
3,629,183	+		ABI39_RS13950	0.77	-0.3
3,629,213	+		ABI39_RS13950	0.78	-1.1
3,629,230	-		ABI39_RS13950	0.78	-0.8
3,629,313	-		ABI39_RS13950	0.81	-0.6
3,629,328	-		ABI39_RS13950	0.82	+0.7
3,629,422	-		ABI39_RS13950	0.85	-0.2
3,629,422	-		ABI39_RS13950	0.85	+0.0
3,629,422	-		ABI39_RS13950	0.85	+0.9
3,629,914	+				-0.4
3,630,088	-		ABI39_RS13955	0.15	+0.1
3,630,088	-		ABI39_RS13955	0.15	-1.2
3,630,127	+		ABI39_RS13955	0.18	-0.0
3,630,128	-		ABI39_RS13955	0.18	-0.7
3,630,348	-		ABI39_RS13955	0.34	-2.2
3,630,494	+		ABI39_RS13955	0.45	+0.1
3,630,495	-		ABI39_RS13955	0.45	-0.6
3,630,495	-		ABI39_RS13955	0.45	+0.9
3,630,649	+		ABI39_RS13955	0.57	+0.3
3,630,861	-		ABI39_RS13955	0.73	+0.1
3,630,944	+		ABI39_RS13955	0.79	+0.0
3,631,038	+		ABI39_RS13955	0.86	+0.2
3,631,038	+		ABI39_RS13955	0.86	+0.2
3,631,200	+				-0.3
3,631,201	-				+0.9
3,631,225	-				-0.0
3,631,621	-		ABI39_RS13960	0.29	-0.3
3,631,660	+		ABI39_RS13960	0.32	+0.3
3,631,726	+		ABI39_RS13960	0.37	+0.7
3,631,882	+		ABI39_RS13960	0.48	+0.0
3,631,883	-		ABI39_RS13960	0.48	+0.3
3,631,903	+		ABI39_RS13960	0.50	-0.0
3,631,904	-		ABI39_RS13960	0.50	-0.1
3,632,026	+		ABI39_RS13960	0.59	+0.2
3,632,027	-		ABI39_RS13960	0.59	+1.1