Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS05785

Experiment: D-Mannose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Mannose 2.5 mg/ml (C)
1,600,646	+		ABI39_RS05775	0.71	-0.1
1,600,646	+		ABI39_RS05775	0.71	+0.2
1,600,662	-		ABI39_RS05775	0.73	-0.5
1,600,665	+		ABI39_RS05775	0.73	+0.1
1,600,666	-		ABI39_RS05775	0.73	+0.9
1,600,708	+		ABI39_RS05775	0.79	+0.3
1,600,709	-		ABI39_RS05775	0.79	-0.6
1,600,736	-		ABI39_RS05775	0.82	+0.1
1,600,825	+				-0.6
1,600,873	-				+0.5
1,600,907	+				+0.5
1,600,912	+				+0.0
1,600,917	+				+0.3
1,600,935	-				+0.7
1,600,935	-				-0.7
1,600,964	-				+0.7
1,600,964	-				+0.6
1,601,197	+		ABI39_RS05780	0.36	+0.9
1,601,200	-		ABI39_RS05780	0.36	+0.4
1,601,300	+		ABI39_RS05780	0.51	+0.3
1,601,301	-		ABI39_RS05780	0.51	+0.8
1,601,301	-		ABI39_RS05780	0.51	-0.3
1,601,301	-		ABI39_RS05780	0.51	-0.0
1,601,344	-		ABI39_RS05780	0.57	+0.1
1,601,347	+		ABI39_RS05780	0.57	+0.6
1,601,357	+		ABI39_RS05780	0.59	+0.3
1,601,357	+		ABI39_RS05780	0.59	+0.4
1,601,362	+		ABI39_RS05780	0.60	-0.8
1,601,440	+		ABI39_RS05780	0.71	+0.3
1,601,468	+		ABI39_RS05780	0.75	+0.7
1,601,492	-		ABI39_RS05780	0.78	+0.4
1,601,492	-		ABI39_RS05780	0.78	-0.6
1,601,492	-		ABI39_RS05780	0.78	-0.4
1,601,572	+		ABI39_RS05780	0.90	+0.8
1,601,668	-				-0.0
1,601,676	-				-0.2
1,601,751	-				-0.8
1,601,756	-				-0.6
1,601,875	+		ABI39_RS05785	0.18	+0.4
1,601,896	-		ABI39_RS05785	0.19	-0.5
1,601,955	+		ABI39_RS05785	0.24	+0.1
1,602,150	+		ABI39_RS05785	0.39	+0.2
1,602,154	+		ABI39_RS05785	0.39	+0.5
1,602,155	-		ABI39_RS05785	0.39	+0.5
1,602,377	-		ABI39_RS05785	0.56	+0.1
1,602,377	-		ABI39_RS05785	0.56	+0.5
1,602,381	+		ABI39_RS05785	0.56	+0.5
1,602,382	-		ABI39_RS05785	0.56	+0.9
1,602,543	+		ABI39_RS05785	0.69	-0.6
1,602,543	+		ABI39_RS05785	0.69	+0.4
1,602,604	-		ABI39_RS05785	0.73	+0.6
1,602,612	+		ABI39_RS05785	0.74	+0.6
1,602,711	-		ABI39_RS05785	0.81	+1.0
1,602,760	+		ABI39_RS05785	0.85	+0.5
1,602,795	+		ABI39_RS05785	0.88	+1.0
1,602,834	+				-0.1
1,602,844	-				+0.8
1,602,844	-				+0.7
1,602,846	-				-0.5
1,602,868	-				+0.3
1,602,870	-				+0.1
1,602,870	-				+0.4
1,602,876	+				-0.7
1,602,877	-				-0.0
1,602,896	-				+0.5
1,602,896	-				-0.2
1,602,903	+				+0.7
1,603,069	-				+1.0
1,603,104	-				+0.0
1,603,131	+				-0.1
1,603,135	+				-0.3
1,603,159	+				+0.4
1,603,159	+				-0.9
1,603,159	+				+0.6
1,603,197	+				-0.3
1,603,255	+				+0.4
1,603,293	-				+0.3
1,603,408	+				+0.2
1,603,482	+				-0.6
1,603,504	+				-0.3
1,603,504	+				-0.3
1,603,511	-				+0.2
1,603,524	+				-0.3
1,603,538	+				+0.4
1,603,538	+				+0.4
1,603,539	-				+0.4
1,603,582	-				+0.4
1,603,709	-				+0.5
1,603,729	-				-0.4
1,603,755	-				-0.2
1,603,822	-				+0.6
1,603,875	+				+0.7
1,603,900	-		ABI39_RS05795	0.14	+0.4
1,603,902	+		ABI39_RS05795	0.14	+0.4