Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS03460

Experiment: D-Mannose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Mannose 2.5 mg/ml (C)
999,791	-		ABI39_RS03455	0.72	-0.3
999,872	+		ABI39_RS03455	0.75	+0.2
999,894	-		ABI39_RS03455	0.76	+0.3
999,960	-		ABI39_RS03455	0.78	+0.1
999,968	+		ABI39_RS03455	0.78	-0.0
1,000,037	+		ABI39_RS03455	0.80	+0.6
1,000,097	+		ABI39_RS03455	0.82	+0.1
1,000,111	+		ABI39_RS03455	0.83	+0.7
1,000,115	+		ABI39_RS03455	0.83	+0.5
1,000,124	+		ABI39_RS03455	0.83	+0.5
1,000,125	-		ABI39_RS03455	0.83	+0.1
1,000,140	-		ABI39_RS03455	0.84	+0.5
1,000,140	-		ABI39_RS03455	0.84	-0.3
1,000,160	+		ABI39_RS03455	0.84	+0.3
1,000,184	+		ABI39_RS03455	0.85	+0.5
1,000,320	+		ABI39_RS03455	0.89	+0.1
1,000,417	-				+0.7
1,000,420	+				+0.4
1,000,427	+				+0.5
1,000,428	-				+0.5
1,000,455	+				+0.4
1,000,484	+				-0.2
1,000,499	+				+0.4
1,000,542	-				+1.6
1,000,628	+				+0.2
1,000,671	+				-0.1
1,000,672	-				+0.8
1,000,868	-				+0.2
1,000,930	-		ABI39_RS03460	0.12	+0.5
1,000,958	+		ABI39_RS03460	0.14	+0.7
1,000,977	-		ABI39_RS03460	0.15	+1.2
1,001,099	+		ABI39_RS03460	0.21	+0.5
1,001,112	+		ABI39_RS03460	0.21	+0.7
1,001,113	-		ABI39_RS03460	0.21	-0.4
1,001,184	-		ABI39_RS03460	0.25	+0.1
1,001,267	+		ABI39_RS03460	0.29	-0.5
1,001,281	+		ABI39_RS03460	0.30	+0.8
1,001,281	+		ABI39_RS03460	0.30	+0.6
1,001,281	+		ABI39_RS03460	0.30	+0.1
1,001,281	+		ABI39_RS03460	0.30	+0.2
1,001,282	-		ABI39_RS03460	0.30	+0.4
1,001,286	-		ABI39_RS03460	0.30	+0.5
1,001,320	+		ABI39_RS03460	0.32	+0.5
1,001,324	+		ABI39_RS03460	0.32	+0.6
1,001,336	+		ABI39_RS03460	0.32	-0.4
1,001,411	-		ABI39_RS03460	0.36	+0.6
1,001,456	+		ABI39_RS03460	0.38	+0.5
1,001,457	-		ABI39_RS03460	0.38	-0.9
1,001,527	+		ABI39_RS03460	0.42	+0.5
1,001,527	+		ABI39_RS03460	0.42	+0.6
1,001,534	-		ABI39_RS03460	0.42	+0.4
1,001,549	+		ABI39_RS03460	0.43	+0.3
1,001,549	+		ABI39_RS03460	0.43	+0.2
1,001,648	+		ABI39_RS03460	0.48	+0.2
1,001,709	-		ABI39_RS03460	0.51	+0.2
1,002,021	+		ABI39_RS03460	0.66	+0.5
1,002,034	-		ABI39_RS03460	0.67	+0.7
1,002,039	-		ABI39_RS03460	0.67	+1.1
1,002,040	+		ABI39_RS03460	0.67	+0.9
1,002,040	+		ABI39_RS03460	0.67	+0.6
1,002,040	+		ABI39_RS03460	0.67	-0.2
1,002,043	-		ABI39_RS03460	0.67	+0.2
1,002,044	+		ABI39_RS03460	0.67	+0.8
1,002,045	-		ABI39_RS03460	0.67	+0.6
1,002,047	+		ABI39_RS03460	0.67	+0.0
1,002,048	-		ABI39_RS03460	0.67	+0.5
1,002,063	+		ABI39_RS03460	0.68	+0.7
1,002,064	-		ABI39_RS03460	0.68	+0.2
1,002,099	+		ABI39_RS03460	0.70	+0.2
1,002,107	+		ABI39_RS03460	0.70	+0.2
1,002,107	+		ABI39_RS03460	0.70	+0.2
1,002,187	+		ABI39_RS03460	0.74	+1.0
1,002,357	+		ABI39_RS03460	0.83	-0.0
1,002,358	-		ABI39_RS03460	0.83	-0.2
1,002,358	-		ABI39_RS03460	0.83	-0.3
1,002,362	-		ABI39_RS03460	0.83	+0.5
1,002,530	-				+0.3
1,002,606	+				+0.5
1,002,639	-				+0.1
1,002,699	-				-0.3
1,002,707	+				-1.2
1,002,708	-				+0.7
1,002,739	-				+0.6
1,002,742	+				+0.7
1,002,819	+				+0.5
1,002,822	-				-0.5
1,003,050	-				-0.5
1,003,050	-				-0.1
1,003,051	+				+0.0
1,003,191	+				+0.5
1,003,257	+				+0.9
1,003,298	+				+0.8
1,003,298	+				+0.2
1,003,301	+				+0.6
1,003,301	+				-0.3
1,003,388	-		ABI39_RS03465	0.12	+0.6
1,003,523	+		ABI39_RS03465	0.15	+0.2
1,003,558	-		ABI39_RS03465	0.16	-0.3
1,003,558	-		ABI39_RS03465	0.16	-0.1
1,003,586	+		ABI39_RS03465	0.17	-0.4