Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS06765

Experiment: D-Glucose 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS06755 and ABI39_RS06760 are separated by 35 nucleotidesABI39_RS06760 and ABI39_RS06765 are separated by 69 nucleotidesABI39_RS06765 and ABI39_RS06770 are separated by 286 nucleotidesABI39_RS06770 and ABI39_RS23160 are separated by 317 nucleotides ABI39_RS06755: ABI39_RS06755 - relaxase/mobilization nuclease domain-containing protein, at 1,875,854 to 1,876,792 _RS06755 ABI39_RS06760: ABI39_RS06760 - hypothetical protein, at 1,876,828 to 1,877,232 _RS06760 ABI39_RS06765: ABI39_RS06765 - hypothetical protein, at 1,877,302 to 1,880,811 _RS06765 ABI39_RS06770: ABI39_RS06770 - hypothetical protein, at 1,881,098 to 1,881,463 _RS06770 ABI39_RS23160: ABI39_RS23160 - hypothetical protein, at 1,881,781 to 1,881,999 _RS23160 Position (kb) 1877 1878 1879 1880 1881Strain fitness (log2 ratio) -1 0 1at 1876.356 kb on - strand, within ABI39_RS06755at 1876.365 kb on - strand, within ABI39_RS06755at 1876.459 kb on - strand, within ABI39_RS06755at 1876.574 kb on + strand, within ABI39_RS06755at 1876.574 kb on + strand, within ABI39_RS06755at 1876.592 kb on - strand, within ABI39_RS06755at 1876.594 kb on + strand, within ABI39_RS06755at 1876.650 kb on - strand, within ABI39_RS06755at 1876.879 kb on + strand, within ABI39_RS06760at 1877.196 kb on + strandat 1877.196 kb on + strandat 1877.229 kb on - strandat 1877.230 kb on + strandat 1877.353 kb on + strandat 1877.438 kb on - strandat 1877.448 kb on - strandat 1877.527 kb on - strandat 1877.529 kb on - strandat 1877.529 kb on - strandat 1877.531 kb on - strandat 1877.531 kb on - strandat 1877.608 kb on + strandat 1877.609 kb on - strandat 1877.614 kb on + strandat 1877.699 kb on + strand, within ABI39_RS06765at 1877.750 kb on - strand, within ABI39_RS06765at 1877.750 kb on - strand, within ABI39_RS06765at 1877.750 kb on - strand, within ABI39_RS06765at 1877.751 kb on + strand, within ABI39_RS06765at 1877.751 kb on + strand, within ABI39_RS06765at 1877.753 kb on + strand, within ABI39_RS06765at 1877.754 kb on - strand, within ABI39_RS06765at 1877.754 kb on - strand, within ABI39_RS06765at 1877.754 kb on - strand, within ABI39_RS06765at 1877.811 kb on - strand, within ABI39_RS06765at 1877.862 kb on + strand, within ABI39_RS06765at 1877.890 kb on - strand, within ABI39_RS06765at 1877.918 kb on + strand, within ABI39_RS06765at 1877.997 kb on - strand, within ABI39_RS06765at 1877.997 kb on - strand, within ABI39_RS06765at 1878.111 kb on + strand, within ABI39_RS06765at 1878.123 kb on + strand, within ABI39_RS06765at 1878.189 kb on + strand, within ABI39_RS06765at 1878.192 kb on + strand, within ABI39_RS06765at 1878.230 kb on - strand, within ABI39_RS06765at 1878.257 kb on - strand, within ABI39_RS06765at 1878.271 kb on + strand, within ABI39_RS06765at 1878.340 kb on + strand, within ABI39_RS06765at 1878.340 kb on + strand, within ABI39_RS06765at 1878.340 kb on + strand, within ABI39_RS06765at 1878.418 kb on + strand, within ABI39_RS06765at 1878.480 kb on - strand, within ABI39_RS06765at 1878.494 kb on - strand, within ABI39_RS06765at 1878.504 kb on + strand, within ABI39_RS06765at 1878.582 kb on + strand, within ABI39_RS06765at 1878.582 kb on + strand, within ABI39_RS06765at 1878.601 kb on + strand, within ABI39_RS06765at 1878.679 kb on + strand, within ABI39_RS06765at 1878.715 kb on + strand, within ABI39_RS06765at 1878.716 kb on - strand, within ABI39_RS06765at 1878.717 kb on + strand, within ABI39_RS06765at 1878.717 kb on + strand, within ABI39_RS06765at 1878.847 kb on + strand, within ABI39_RS06765at 1878.848 kb on - strand, within ABI39_RS06765at 1878.978 kb on - strand, within ABI39_RS06765at 1879.062 kb on - strand, within ABI39_RS06765at 1879.067 kb on + strand, within ABI39_RS06765at 1879.068 kb on - strand, within ABI39_RS06765at 1879.068 kb on - strand, within ABI39_RS06765at 1879.083 kb on + strand, within ABI39_RS06765at 1879.102 kb on + strand, within ABI39_RS06765at 1879.103 kb on - strand, within ABI39_RS06765at 1879.136 kb on + strand, within ABI39_RS06765at 1879.137 kb on - strand, within ABI39_RS06765at 1879.158 kb on + strand, within ABI39_RS06765at 1879.169 kb on - strand, within ABI39_RS06765at 1879.170 kb on + strand, within ABI39_RS06765at 1879.170 kb on + strand, within ABI39_RS06765at 1879.171 kb on - strand, within ABI39_RS06765at 1879.171 kb on - strand, within ABI39_RS06765at 1879.171 kb on - strand, within ABI39_RS06765at 1879.214 kb on + strand, within ABI39_RS06765at 1879.215 kb on - strand, within ABI39_RS06765at 1879.216 kb on + strand, within ABI39_RS06765at 1879.269 kb on + strand, within ABI39_RS06765at 1879.317 kb on + strand, within ABI39_RS06765at 1879.343 kb on + strand, within ABI39_RS06765at 1879.424 kb on - strand, within ABI39_RS06765at 1879.450 kb on - strand, within ABI39_RS06765at 1879.465 kb on - strand, within ABI39_RS06765at 1879.624 kb on + strand, within ABI39_RS06765at 1879.632 kb on + strand, within ABI39_RS06765at 1879.635 kb on - strand, within ABI39_RS06765at 1879.696 kb on + strand, within ABI39_RS06765at 1879.696 kb on + strand, within ABI39_RS06765at 1879.697 kb on - strand, within ABI39_RS06765at 1879.708 kb on + strand, within ABI39_RS06765at 1879.828 kb on + strand, within ABI39_RS06765at 1879.852 kb on - strand, within ABI39_RS06765at 1879.886 kb on - strand, within ABI39_RS06765at 1879.889 kb on - strand, within ABI39_RS06765at 1879.891 kb on - strand, within ABI39_RS06765at 1879.974 kb on + strand, within ABI39_RS06765at 1880.104 kb on - strand, within ABI39_RS06765at 1880.104 kb on - strand, within ABI39_RS06765at 1880.112 kb on + strand, within ABI39_RS06765at 1880.283 kb on - strand, within ABI39_RS06765at 1880.338 kb on - strand, within ABI39_RS06765at 1880.338 kb on - strand, within ABI39_RS06765at 1880.342 kb on - strand, within ABI39_RS06765at 1880.448 kb on + strand, within ABI39_RS06765at 1880.498 kb on - strandat 1880.509 kb on + strandat 1880.653 kb on + strandat 1880.654 kb on - strandat 1880.743 kb on + strandat 1880.744 kb on - strandat 1880.842 kb on + strandat 1880.873 kb on + strandat 1880.875 kb on + strandat 1880.875 kb on + strandat 1881.025 kb on + strandat 1881.026 kb on - strandat 1881.048 kb on - strandat 1881.059 kb on + strandat 1881.083 kb on + strandat 1881.092 kb on + strandat 1881.155 kb on - strand, within ABI39_RS06770at 1881.175 kb on + strand, within ABI39_RS06770at 1881.213 kb on - strand, within ABI39_RS06770at 1881.219 kb on - strand, within ABI39_RS06770at 1881.287 kb on + strand, within ABI39_RS06770at 1881.369 kb on - strand, within ABI39_RS06770at 1881.411 kb on - strand, within ABI39_RS06770at 1881.470 kb on - strandat 1881.470 kb on - strandat 1881.623 kb on + strandat 1881.701 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 2.5 mg/ml (C)
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1,876,356 - ABI39_RS06755 0.53 +0.6
1,876,365 - ABI39_RS06755 0.54 -0.5
1,876,459 - ABI39_RS06755 0.64 +0.3
1,876,574 + ABI39_RS06755 0.77 -0.2
1,876,574 + ABI39_RS06755 0.77 -0.9
1,876,592 - ABI39_RS06755 0.79 +0.3
1,876,594 + ABI39_RS06755 0.79 +0.5
1,876,650 - ABI39_RS06755 0.85 +0.2
1,876,879 + ABI39_RS06760 0.13 +0.6
1,877,196 + -0.2
1,877,196 + +0.1
1,877,229 - +1.0
1,877,230 + +0.1
1,877,353 + +0.1
1,877,438 - -0.2
1,877,448 - -0.1
1,877,527 - -0.0
1,877,529 - -0.5
1,877,529 - +0.0
1,877,531 - +0.5
1,877,531 - +0.2
1,877,608 + +0.6
1,877,609 - -0.2
1,877,614 + +0.5
1,877,699 + ABI39_RS06765 0.11 -0.4
1,877,750 - ABI39_RS06765 0.13 -0.4
1,877,750 - ABI39_RS06765 0.13 +0.3
1,877,750 - ABI39_RS06765 0.13 +0.3
1,877,751 + ABI39_RS06765 0.13 +0.3
1,877,751 + ABI39_RS06765 0.13 -0.1
1,877,753 + ABI39_RS06765 0.13 +0.2
1,877,754 - ABI39_RS06765 0.13 -0.2
1,877,754 - ABI39_RS06765 0.13 +0.5
1,877,754 - ABI39_RS06765 0.13 +0.2
1,877,811 - ABI39_RS06765 0.15 +0.3
1,877,862 + ABI39_RS06765 0.16 +0.4
1,877,890 - ABI39_RS06765 0.17 +0.7
1,877,918 + ABI39_RS06765 0.18 +0.4
1,877,997 - ABI39_RS06765 0.20 +0.1
1,877,997 - ABI39_RS06765 0.20 -1.0
1,878,111 + ABI39_RS06765 0.23 -0.2
1,878,123 + ABI39_RS06765 0.23 +0.7
1,878,189 + ABI39_RS06765 0.25 +0.6
1,878,192 + ABI39_RS06765 0.25 +0.5
1,878,230 - ABI39_RS06765 0.26 +0.7
1,878,257 - ABI39_RS06765 0.27 +0.5
1,878,271 + ABI39_RS06765 0.28 +0.9
1,878,340 + ABI39_RS06765 0.30 +0.7
1,878,340 + ABI39_RS06765 0.30 +0.8
1,878,340 + ABI39_RS06765 0.30 +0.5
1,878,418 + ABI39_RS06765 0.32 +0.6
1,878,480 - ABI39_RS06765 0.34 +0.7
1,878,494 - ABI39_RS06765 0.34 +0.2
1,878,504 + ABI39_RS06765 0.34 +1.0
1,878,582 + ABI39_RS06765 0.36 +0.6
1,878,582 + ABI39_RS06765 0.36 +0.5
1,878,601 + ABI39_RS06765 0.37 +0.4
1,878,679 + ABI39_RS06765 0.39 -0.6
1,878,715 + ABI39_RS06765 0.40 +0.3
1,878,716 - ABI39_RS06765 0.40 +0.9
1,878,717 + ABI39_RS06765 0.40 +0.4
1,878,717 + ABI39_RS06765 0.40 +0.2
1,878,847 + ABI39_RS06765 0.44 +0.1
1,878,848 - ABI39_RS06765 0.44 +0.2
1,878,978 - ABI39_RS06765 0.48 -0.2
1,879,062 - ABI39_RS06765 0.50 -0.2
1,879,067 + ABI39_RS06765 0.50 +0.4
1,879,068 - ABI39_RS06765 0.50 +0.4
1,879,068 - ABI39_RS06765 0.50 +0.4
1,879,083 + ABI39_RS06765 0.51 +0.1
1,879,102 + ABI39_RS06765 0.51 +0.8
1,879,103 - ABI39_RS06765 0.51 +0.5
1,879,136 + ABI39_RS06765 0.52 +0.0
1,879,137 - ABI39_RS06765 0.52 +0.6
1,879,158 + ABI39_RS06765 0.53 +0.5
1,879,169 - ABI39_RS06765 0.53 +0.1
1,879,170 + ABI39_RS06765 0.53 +0.4
1,879,170 + ABI39_RS06765 0.53 +0.5
1,879,171 - ABI39_RS06765 0.53 -0.1
1,879,171 - ABI39_RS06765 0.53 -0.2
1,879,171 - ABI39_RS06765 0.53 +0.9
1,879,214 + ABI39_RS06765 0.54 +1.0
1,879,215 - ABI39_RS06765 0.55 -0.0
1,879,216 + ABI39_RS06765 0.55 +0.7
1,879,269 + ABI39_RS06765 0.56 +0.0
1,879,317 + ABI39_RS06765 0.57 +0.4
1,879,343 + ABI39_RS06765 0.58 +0.1
1,879,424 - ABI39_RS06765 0.60 +0.3
1,879,450 - ABI39_RS06765 0.61 +0.6
1,879,465 - ABI39_RS06765 0.62 +0.2
1,879,624 + ABI39_RS06765 0.66 +0.8
1,879,632 + ABI39_RS06765 0.66 -0.1
1,879,635 - ABI39_RS06765 0.66 +0.5
1,879,696 + ABI39_RS06765 0.68 +0.1
1,879,696 + ABI39_RS06765 0.68 +0.3
1,879,697 - ABI39_RS06765 0.68 +0.2
1,879,708 + ABI39_RS06765 0.69 +0.7
1,879,828 + ABI39_RS06765 0.72 +0.8
1,879,852 - ABI39_RS06765 0.73 +0.0
1,879,886 - ABI39_RS06765 0.74 +0.3
1,879,889 - ABI39_RS06765 0.74 -0.5
1,879,891 - ABI39_RS06765 0.74 +0.4
1,879,974 + ABI39_RS06765 0.76 -0.3
1,880,104 - ABI39_RS06765 0.80 +0.7
1,880,104 - ABI39_RS06765 0.80 +0.4
1,880,112 + ABI39_RS06765 0.80 +0.6
1,880,283 - ABI39_RS06765 0.85 +0.8
1,880,338 - ABI39_RS06765 0.86 +0.8
1,880,338 - ABI39_RS06765 0.86 +0.8
1,880,342 - ABI39_RS06765 0.87 +0.4
1,880,448 + ABI39_RS06765 0.90 +0.7
1,880,498 - +0.1
1,880,509 + +0.1
1,880,653 + +0.4
1,880,654 - +0.3
1,880,743 + -0.2
1,880,744 - -0.3
1,880,842 + +0.5
1,880,873 + +0.0
1,880,875 + +0.3
1,880,875 + +0.9
1,881,025 + -0.9
1,881,026 - -0.0
1,881,048 - +0.9
1,881,059 + +0.5
1,881,083 + +0.6
1,881,092 + +1.0
1,881,155 - ABI39_RS06770 0.16 +1.0
1,881,175 + ABI39_RS06770 0.21 -0.3
1,881,213 - ABI39_RS06770 0.31 +0.7
1,881,219 - ABI39_RS06770 0.33 +0.9
1,881,287 + ABI39_RS06770 0.52 +0.1
1,881,369 - ABI39_RS06770 0.74 +0.8
1,881,411 - ABI39_RS06770 0.86 +0.8
1,881,470 - -0.0
1,881,470 - +0.3
1,881,623 + +0.7
1,881,701 - -0.0

Or see this region's nucleotide sequence