Experiment: D-Glucose 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS21185 and ABI39_RS21190 are separated by 305 nucleotides ABI39_RS21190 and ABI39_RS21195 are separated by 12 nucleotides
ABI39_RS21185: ABI39_RS21185 - ROK family transcriptional regulator, at 5,215,469 to 5,216,674
_RS21185
ABI39_RS21190: ABI39_RS21190 - dihydrodipicolinate synthase family protein, at 5,216,980 to 5,217,894
_RS21190
ABI39_RS21195: ABI39_RS21195 - AGE family epimerase/isomerase, at 5,217,907 to 5,219,103
_RS21195
Position (kb) 5216
5217
5218 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5215.993 kb on + strand, within ABI39_RS21185 at 5216.027 kb on - strand, within ABI39_RS21185 at 5216.065 kb on + strand, within ABI39_RS21185 at 5216.068 kb on - strand, within ABI39_RS21185 at 5216.068 kb on - strand, within ABI39_RS21185 at 5216.179 kb on - strand, within ABI39_RS21185 at 5216.182 kb on + strand, within ABI39_RS21185 at 5216.182 kb on + strand, within ABI39_RS21185 at 5216.183 kb on - strand, within ABI39_RS21185 at 5216.219 kb on + strand, within ABI39_RS21185 at 5216.239 kb on + strand, within ABI39_RS21185 at 5216.592 kb on + strand at 5216.599 kb on - strand at 5217.016 kb on - strand at 5217.026 kb on - strand at 5217.047 kb on - strand at 5217.064 kb on + strand at 5217.130 kb on + strand, within ABI39_RS21190 at 5217.133 kb on - strand, within ABI39_RS21190 at 5217.183 kb on - strand, within ABI39_RS21190 at 5217.353 kb on + strand, within ABI39_RS21190 at 5217.500 kb on - strand, within ABI39_RS21190 at 5217.506 kb on - strand, within ABI39_RS21190 at 5217.918 kb on - strand at 5217.991 kb on + strand at 5218.018 kb on - strand at 5218.021 kb on + strand at 5218.021 kb on + strand at 5218.021 kb on + strand at 5218.022 kb on - strand at 5218.022 kb on - strand at 5218.096 kb on - strand, within ABI39_RS21195 at 5218.096 kb on - strand, within ABI39_RS21195 at 5218.105 kb on + strand, within ABI39_RS21195 at 5218.112 kb on - strand, within ABI39_RS21195 at 5218.113 kb on + strand, within ABI39_RS21195 at 5218.114 kb on - strand, within ABI39_RS21195 at 5218.116 kb on + strand, within ABI39_RS21195 at 5218.117 kb on - strand, within ABI39_RS21195 at 5218.163 kb on + strand, within ABI39_RS21195 at 5218.164 kb on - strand, within ABI39_RS21195 at 5218.204 kb on - strand, within ABI39_RS21195 at 5218.321 kb on + strand, within ABI39_RS21195 at 5218.322 kb on - strand, within ABI39_RS21195 at 5218.571 kb on + strand, within ABI39_RS21195 at 5218.633 kb on - strand, within ABI39_RS21195 at 5218.851 kb on + strand, within ABI39_RS21195 at 5218.865 kb on - strand, within ABI39_RS21195 at 5218.865 kb on - strand, within ABI39_RS21195
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 2.5 mg/ml (C) remove 5,215,993 + ABI39_RS21185 0.43 -0.3 5,216,027 - ABI39_RS21185 0.46 -1.2 5,216,065 + ABI39_RS21185 0.49 +0.3 5,216,068 - ABI39_RS21185 0.50 -0.3 5,216,068 - ABI39_RS21185 0.50 -0.7 5,216,179 - ABI39_RS21185 0.59 -0.5 5,216,182 + ABI39_RS21185 0.59 -0.3 5,216,182 + ABI39_RS21185 0.59 -0.9 5,216,183 - ABI39_RS21185 0.59 -0.3 5,216,219 + ABI39_RS21185 0.62 -0.1 5,216,239 + ABI39_RS21185 0.64 -0.6 5,216,592 + -0.3 5,216,599 - +0.4 5,217,016 - -0.5 5,217,026 - +0.5 5,217,047 - -0.9 5,217,064 + +0.5 5,217,130 + ABI39_RS21190 0.16 +0.3 5,217,133 - ABI39_RS21190 0.17 -0.9 5,217,183 - ABI39_RS21190 0.22 -2.9 5,217,353 + ABI39_RS21190 0.41 -2.0 5,217,500 - ABI39_RS21190 0.57 +0.5 5,217,506 - ABI39_RS21190 0.57 -0.9 5,217,918 - +0.8 5,217,991 + +0.4 5,218,018 - +0.8 5,218,021 + +0.0 5,218,021 + +0.1 5,218,021 + +1.7 5,218,022 - -0.9 5,218,022 - -0.3 5,218,096 - ABI39_RS21195 0.16 +0.8 5,218,096 - ABI39_RS21195 0.16 -1.2 5,218,105 + ABI39_RS21195 0.17 +0.1 5,218,112 - ABI39_RS21195 0.17 +1.0 5,218,113 + ABI39_RS21195 0.17 +0.9 5,218,114 - ABI39_RS21195 0.17 +0.6 5,218,116 + ABI39_RS21195 0.17 +0.2 5,218,117 - ABI39_RS21195 0.18 +0.3 5,218,163 + ABI39_RS21195 0.21 +0.2 5,218,164 - ABI39_RS21195 0.21 -0.9 5,218,204 - ABI39_RS21195 0.25 +0.2 5,218,321 + ABI39_RS21195 0.35 -0.3 5,218,322 - ABI39_RS21195 0.35 -0.5 5,218,571 + ABI39_RS21195 0.55 -1.9 5,218,633 - ABI39_RS21195 0.61 -0.9 5,218,851 + ABI39_RS21195 0.79 +0.9 5,218,865 - ABI39_RS21195 0.80 -1.1 5,218,865 - ABI39_RS21195 0.80 -1.4
Or see this region's nucleotide sequence