Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS16325

Experiment: D-Glucose 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS16310 and ABI39_RS16315 are separated by 11 nucleotidesABI39_RS16315 and ABI39_RS16320 are separated by 4 nucleotidesABI39_RS16320 and ABI39_RS16325 overlap by 26 nucleotidesABI39_RS16325 and ABI39_RS16330 are separated by 72 nucleotidesABI39_RS16330 and ABI39_RS16335 are separated by 1 nucleotides ABI39_RS16310: ABI39_RS16310 - conjugative transposon protein TraJ, at 4,158,389 to 4,159,468 _RS16310 ABI39_RS16315: ABI39_RS16315 - conjugative transposon protein TraK, at 4,159,480 to 4,160,103 _RS16315 ABI39_RS16320: ABI39_RS16320 - DUF3989 domain-containing protein, at 4,160,108 to 4,160,407 _RS16320 ABI39_RS16325: ABI39_RS16325 - conjugative transposon protein TraM, at 4,160,382 to 4,161,662 _RS16325 ABI39_RS16330: ABI39_RS16330 - conjugative transposon protein TraN, at 4,161,735 to 4,162,655 _RS16330 ABI39_RS16335: ABI39_RS16335 - conjugal transfer protein TraO, at 4,162,657 to 4,163,241 _RS16335 Position (kb) 4160 4161 4162Strain fitness (log2 ratio) -3 -2 -1 0 1at 4159.451 kb on - strandat 4159.627 kb on + strand, within ABI39_RS16315at 4160.101 kb on + strandat 4160.331 kb on + strand, within ABI39_RS16320at 4160.830 kb on - strand, within ABI39_RS16325at 4161.666 kb on + strandat 4161.677 kb on + strandat 4161.727 kb on + strandat 4161.820 kb on - strandat 4161.994 kb on + strand, within ABI39_RS16330at 4162.173 kb on + strand, within ABI39_RS16330at 4162.174 kb on - strand, within ABI39_RS16330at 4162.233 kb on + strand, within ABI39_RS16330at 4162.291 kb on - strand, within ABI39_RS16330at 4162.308 kb on + strand, within ABI39_RS16330at 4162.309 kb on - strand, within ABI39_RS16330

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 2.5 mg/ml (C)
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4,159,451 - -0.4
4,159,627 + ABI39_RS16315 0.24 -1.2
4,160,101 + -2.8
4,160,331 + ABI39_RS16320 0.74 -0.8
4,160,830 - ABI39_RS16325 0.35 -1.2
4,161,666 + -0.9
4,161,677 + -0.1
4,161,727 + -2.5
4,161,820 - -2.0
4,161,994 + ABI39_RS16330 0.28 -3.1
4,162,173 + ABI39_RS16330 0.48 -2.1
4,162,174 - ABI39_RS16330 0.48 -0.3
4,162,233 + ABI39_RS16330 0.54 -1.3
4,162,291 - ABI39_RS16330 0.60 -0.0
4,162,308 + ABI39_RS16330 0.62 -0.7
4,162,309 - ABI39_RS16330 0.62 -0.4

Or see this region's nucleotide sequence