Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS14230

Experiment: D-Glucose 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS14225 and ABI39_RS14230 are separated by 18 nucleotidesABI39_RS14230 and ABI39_RS14235 are separated by 150 nucleotidesABI39_RS14235 and ABI39_RS14240 are separated by 7 nucleotides ABI39_RS14225: ABI39_RS14225 - glycosyltransferase, at 3,698,314 to 3,699,579 _RS14225 ABI39_RS14230: ABI39_RS14230 - alpha-amylase, at 3,699,598 to 3,701,010 _RS14230 ABI39_RS14235: ABI39_RS14235 - hypothetical protein, at 3,701,161 to 3,701,529 _RS14235 ABI39_RS14240: ABI39_RS14240 - biotin synthase BioB, at 3,701,537 to 3,702,496 _RS14240 Position (kb) 3699 3700 3701 3702Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3698.629 kb on - strand, within ABI39_RS14225at 3698.850 kb on + strand, within ABI39_RS14225at 3698.856 kb on - strand, within ABI39_RS14225at 3698.856 kb on - strand, within ABI39_RS14225at 3698.858 kb on - strand, within ABI39_RS14225at 3698.942 kb on - strand, within ABI39_RS14225at 3699.261 kb on + strand, within ABI39_RS14225at 3699.262 kb on - strand, within ABI39_RS14225at 3699.392 kb on + strand, within ABI39_RS14225at 3699.393 kb on - strand, within ABI39_RS14225at 3699.581 kb on - strandat 3699.592 kb on + strandat 3699.608 kb on + strandat 3699.723 kb on + strandat 3699.790 kb on - strand, within ABI39_RS14230at 3699.975 kb on + strand, within ABI39_RS14230at 3699.975 kb on + strand, within ABI39_RS14230at 3699.976 kb on - strand, within ABI39_RS14230at 3700.090 kb on - strand, within ABI39_RS14230at 3700.114 kb on - strand, within ABI39_RS14230at 3700.138 kb on + strand, within ABI39_RS14230at 3700.138 kb on + strand, within ABI39_RS14230at 3700.139 kb on - strand, within ABI39_RS14230at 3700.176 kb on - strand, within ABI39_RS14230at 3700.264 kb on + strand, within ABI39_RS14230at 3700.362 kb on + strand, within ABI39_RS14230at 3700.482 kb on + strand, within ABI39_RS14230at 3700.482 kb on + strand, within ABI39_RS14230at 3700.483 kb on - strand, within ABI39_RS14230at 3700.563 kb on + strand, within ABI39_RS14230at 3700.563 kb on + strand, within ABI39_RS14230at 3700.605 kb on + strand, within ABI39_RS14230at 3700.723 kb on + strand, within ABI39_RS14230at 3700.723 kb on + strand, within ABI39_RS14230at 3700.723 kb on + strand, within ABI39_RS14230at 3700.812 kb on + strand, within ABI39_RS14230at 3700.813 kb on - strand, within ABI39_RS14230at 3701.122 kb on + strandat 3701.188 kb on - strandat 3701.221 kb on + strand, within ABI39_RS14235at 3701.536 kb on + strandat 3701.655 kb on + strand, within ABI39_RS14240at 3701.760 kb on - strand, within ABI39_RS14240

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 2.5 mg/ml (C)
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3,698,629 - ABI39_RS14225 0.25 -3.1
3,698,850 + ABI39_RS14225 0.42 -3.4
3,698,856 - ABI39_RS14225 0.43 -3.0
3,698,856 - ABI39_RS14225 0.43 -4.0
3,698,858 - ABI39_RS14225 0.43 -3.5
3,698,942 - ABI39_RS14225 0.50 -4.5
3,699,261 + ABI39_RS14225 0.75 -3.3
3,699,262 - ABI39_RS14225 0.75 -3.0
3,699,392 + ABI39_RS14225 0.85 -4.2
3,699,393 - ABI39_RS14225 0.85 -2.4
3,699,581 - -3.4
3,699,592 + -2.7
3,699,608 + -4.6
3,699,723 + -3.9
3,699,790 - ABI39_RS14230 0.14 -2.1
3,699,975 + ABI39_RS14230 0.27 -2.8
3,699,975 + ABI39_RS14230 0.27 -5.2
3,699,976 - ABI39_RS14230 0.27 -1.8
3,700,090 - ABI39_RS14230 0.35 -4.7
3,700,114 - ABI39_RS14230 0.37 -2.4
3,700,138 + ABI39_RS14230 0.38 -4.3
3,700,138 + ABI39_RS14230 0.38 -4.0
3,700,139 - ABI39_RS14230 0.38 -2.3
3,700,176 - ABI39_RS14230 0.41 -4.7
3,700,264 + ABI39_RS14230 0.47 -4.6
3,700,362 + ABI39_RS14230 0.54 -5.4
3,700,482 + ABI39_RS14230 0.63 -4.5
3,700,482 + ABI39_RS14230 0.63 -4.6
3,700,483 - ABI39_RS14230 0.63 -3.2
3,700,563 + ABI39_RS14230 0.68 -5.7
3,700,563 + ABI39_RS14230 0.68 -5.9
3,700,605 + ABI39_RS14230 0.71 -3.5
3,700,723 + ABI39_RS14230 0.80 -3.6
3,700,723 + ABI39_RS14230 0.80 -5.1
3,700,723 + ABI39_RS14230 0.80 -3.6
3,700,812 + ABI39_RS14230 0.86 -3.6
3,700,813 - ABI39_RS14230 0.86 -4.1
3,701,122 + -0.2
3,701,188 - -0.2
3,701,221 + ABI39_RS14235 0.16 +0.1
3,701,536 + -1.0
3,701,655 + ABI39_RS14240 0.12 +0.4
3,701,760 - ABI39_RS14240 0.23 +0.9

Or see this region's nucleotide sequence