Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS13260

Experiment: D-Glucose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose 2.5 mg/ml (C)
3,453,648	-		ABI39_RS13255	0.48	-0.8
3,453,650	-		ABI39_RS13255	0.48	+0.3
3,453,687	-		ABI39_RS13255	0.50	-0.3
3,453,696	+		ABI39_RS13255	0.51	+0.3
3,453,696	+		ABI39_RS13255	0.51	-1.4
3,453,696	+		ABI39_RS13255	0.51	+0.2
3,453,749	+		ABI39_RS13255	0.54	+0.3
3,453,750	-		ABI39_RS13255	0.54	+0.2
3,453,750	-		ABI39_RS13255	0.54	+0.3
3,453,750	-		ABI39_RS13255	0.54	-0.9
3,453,753	+		ABI39_RS13255	0.54	-0.2
3,453,753	+		ABI39_RS13255	0.54	+0.1
3,453,785	+		ABI39_RS13255	0.56	+0.9
3,453,785	+		ABI39_RS13255	0.56	-0.4
3,454,092	+		ABI39_RS13255	0.72	-0.2
3,454,150	+		ABI39_RS13255	0.76	-0.0
3,454,151	-		ABI39_RS13255	0.76	+0.1
3,454,158	-		ABI39_RS13255	0.76	-0.9
3,454,190	-		ABI39_RS13255	0.78	-0.2
3,454,190	-		ABI39_RS13255	0.78	-0.1
3,454,190	-		ABI39_RS13255	0.78	-1.0
3,454,190	-		ABI39_RS13255	0.78	+0.9
3,454,234	+		ABI39_RS13255	0.80	-0.5
3,454,242	-		ABI39_RS13255	0.81	-0.6
3,454,242	-		ABI39_RS13255	0.81	-0.3
3,454,296	+		ABI39_RS13255	0.84	-0.4
3,454,297	-		ABI39_RS13255	0.84	-1.1
3,454,321	+		ABI39_RS13255	0.85	-0.5
3,454,321	+		ABI39_RS13255	0.85	-0.1
3,454,364	+		ABI39_RS13255	0.87	-0.1
3,454,578	+				+0.6
3,454,579	-				-0.6
3,454,579	-				-0.6
3,454,972	+		ABI39_RS13260	0.17	+0.0
3,454,977	-		ABI39_RS13260	0.17	+0.2
3,454,999	+		ABI39_RS13260	0.18	-0.5
3,455,269	+		ABI39_RS13260	0.31	-2.5
3,455,274	-		ABI39_RS13260	0.31	+0.1
3,455,414	-		ABI39_RS13260	0.37	-2.1
3,455,435	+		ABI39_RS13260	0.38	-0.1
3,455,436	-		ABI39_RS13260	0.39	+0.4
3,455,525	-		ABI39_RS13260	0.43	-0.2
3,455,556	+		ABI39_RS13260	0.44	-0.5
3,455,564	+		ABI39_RS13260	0.44	+0.2
3,455,565	-		ABI39_RS13260	0.45	-0.2
3,455,579	-		ABI39_RS13260	0.45	-0.3
3,455,579	-		ABI39_RS13260	0.45	-1.9
3,455,579	-		ABI39_RS13260	0.45	-0.2
3,455,666	+		ABI39_RS13260	0.49	-0.2
3,455,747	-		ABI39_RS13260	0.53	+0.1
3,455,753	-		ABI39_RS13260	0.53	-0.8
3,455,795	+		ABI39_RS13260	0.55	-0.4
3,455,798	-		ABI39_RS13260	0.55	+0.1
3,455,802	-		ABI39_RS13260	0.56	-0.1
3,455,802	-		ABI39_RS13260	0.56	-0.6
3,455,865	+		ABI39_RS13260	0.59	-0.4
3,456,194	+		ABI39_RS13260	0.74	-0.1
3,456,402	-		ABI39_RS13260	0.84	-1.5
3,456,441	-		ABI39_RS13260	0.85	-0.3
3,456,441	-		ABI39_RS13260	0.85	-0.5
3,456,495	-		ABI39_RS13260	0.88	+1.1
3,456,495	-		ABI39_RS13260	0.88	-0.5
3,456,509	+		ABI39_RS13260	0.89	-0.1
3,456,601	-				-0.2
3,456,604	+				-0.4
3,456,720	+				-2.7
3,456,783	-				-1.1
3,456,783	-				-1.0
3,456,810	+				+0.9
3,456,810	+				-0.1
3,456,811	-				+0.6
3,456,897	-				-0.2
3,457,025	+		ABI39_RS13265	0.25	-1.5
3,457,195	+		ABI39_RS13265	0.65	-1.0
3,457,201	-		ABI39_RS13265	0.66	+0.2
3,457,336	+				-0.2
3,457,339	-				+0.8
3,457,372	-				+0.6
3,457,428	+				+0.1
3,457,428	+				-0.8
3,457,447	+				-0.4
3,457,478	-		ABI39_RS13270	0.12	+0.3
3,457,478	-		ABI39_RS13270	0.12	+0.8
3,457,492	-		ABI39_RS13270	0.14	+1.1
3,457,562	-		ABI39_RS13270	0.20	+0.5
3,457,648	+		ABI39_RS13270	0.29	+0.0
3,457,649	-		ABI39_RS13270	0.29	+0.6
3,457,655	-		ABI39_RS13270	0.29	+0.7
3,457,656	+		ABI39_RS13270	0.30	-1.4