Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS04925

Experiment: D-Glucosamine Hydrochloride 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucosamine Hydrochloride 2.5 mg/ml (C)
1,367,430	+		ABI39_RS04915	0.61	-1.9
1,367,452	-		ABI39_RS04915	0.64	-0.3
1,367,496	-		ABI39_RS04915	0.69	-1.2
1,367,641	-		ABI39_RS04915	0.86	+0.3
1,367,641	-		ABI39_RS04915	0.86	-0.9
1,367,664	+		ABI39_RS04915	0.89	+0.2
1,367,665	-		ABI39_RS04915	0.89	-0.6
1,367,668	+		ABI39_RS04915	0.90	+0.3
1,367,668	+		ABI39_RS04915	0.90	-1.0
1,367,668	+		ABI39_RS04915	0.90	+0.0
1,367,669	-		ABI39_RS04915	0.90	+0.3
1,367,669	-		ABI39_RS04915	0.90	+0.4
1,367,672	+				-0.7
1,367,673	-				-0.4
1,367,673	-				+0.3
1,367,673	-				+0.3
1,367,673	-				+0.1
1,367,673	-				+0.1
1,367,691	-				+0.1
1,367,741	-				-0.6
1,367,741	-				+0.3
1,367,824	+				+0.6
1,368,083	-		ABI39_RS04920	0.49	-1.2
1,368,083	-		ABI39_RS04920	0.49	+1.4
1,368,219	+		ABI39_RS04920	0.70	+0.3
1,368,235	+		ABI39_RS04920	0.72	+0.2
1,368,258	-		ABI39_RS04920	0.76	-0.5
1,368,297	-		ABI39_RS04920	0.82	+0.2
1,368,307	-		ABI39_RS04920	0.83	-1.0
1,368,405	+				+0.1
1,368,670	+		ABI39_RS04925	0.38	+0.3
1,368,671	-		ABI39_RS04925	0.38	+0.6
1,368,675	+		ABI39_RS04925	0.39	-0.2
1,368,713	+		ABI39_RS04925	0.45	-0.5
1,368,715	+		ABI39_RS04925	0.45	-0.1
1,368,716	-		ABI39_RS04925	0.45	-0.3
1,368,771	-		ABI39_RS04925	0.54	-0.1
1,368,818	-		ABI39_RS04925	0.61	-0.1
1,368,834	+		ABI39_RS04925	0.64	-0.3
1,368,840	+		ABI39_RS04925	0.65	-0.7
1,368,841	-		ABI39_RS04925	0.65	-0.2
1,368,916	+		ABI39_RS04925	0.77	+0.4
1,368,916	+		ABI39_RS04925	0.77	-0.7
1,368,956	+		ABI39_RS04925	0.83	+0.0
1,369,075	+				+1.1
1,369,091	-				-1.4
1,369,155	+				+0.2
1,369,156	-				-0.0
1,369,169	+				+0.3
1,369,216	-				-0.7
1,369,259	-				-0.7
1,369,347	+				-0.9
1,369,362	+		ABI39_RS04930	0.12	-0.4
1,369,486	+		ABI39_RS04930	0.70	-1.3
1,369,500	+		ABI39_RS04930	0.77	-1.5
1,369,501	-		ABI39_RS04930	0.77	-1.9
1,369,531	+				+0.4
1,369,553	-				-0.6
1,369,586	-				-0.2
1,369,676	+				-0.2
1,369,747	-				+0.1
1,369,837	+				+0.1
1,369,838	-				+0.0
1,369,838	-				-0.1
1,369,838	-				-0.1
1,369,922	+		ABI39_RS04935	0.20	+0.1
1,369,950	-		ABI39_RS04935	0.28	+0.5
1,369,950	-		ABI39_RS04935	0.28	+0.3
1,370,008	+		ABI39_RS04935	0.44	-0.6
1,370,012	+		ABI39_RS04935	0.45	+0.3
1,370,013	-		ABI39_RS04935	0.45	-0.0
1,370,015	+		ABI39_RS04935	0.46	+0.1
1,370,016	-		ABI39_RS04935	0.46	+0.1
1,370,055	+		ABI39_RS04935	0.57	-0.3