Strain Fitness in Escherichia coli ECRC102 around NIAGMN_15445

Experiment: JK42

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JK42
3,054,543	+	yhdJ	NIAGMN_15435	0.35	+0.3
3,054,543	+	yhdJ	NIAGMN_15435	0.35	+0.9
3,054,558	+	yhdJ	NIAGMN_15435	0.37	+0.3
3,054,609	+	yhdJ	NIAGMN_15435	0.42	-0.8
3,054,609	+	yhdJ	NIAGMN_15435	0.42	-2.9
3,054,610	-	yhdJ	NIAGMN_15435	0.43	+0.2
3,054,610	-	yhdJ	NIAGMN_15435	0.43	+0.8
3,054,610	-	yhdJ	NIAGMN_15435	0.43	+0.6
3,054,738	+	yhdJ	NIAGMN_15435	0.57	-0.1
3,054,738	+	yhdJ	NIAGMN_15435	0.57	+0.8
3,054,739	-	yhdJ	NIAGMN_15435	0.57	+1.5
3,054,751	-	yhdJ	NIAGMN_15435	0.59	+0.2
3,054,783	+	yhdJ	NIAGMN_15435	0.62	+0.5
3,054,870	+	yhdJ	NIAGMN_15435	0.72	-1.2
3,054,870	+	yhdJ	NIAGMN_15435	0.72	-0.7
3,054,870	+	yhdJ	NIAGMN_15435	0.72	+1.0
3,054,870	+	yhdJ	NIAGMN_15435	0.72	+0.2
3,054,870	+	yhdJ	NIAGMN_15435	0.72	+0.1
3,054,871	-	yhdJ	NIAGMN_15435	0.72	+0.8
3,054,871	-	yhdJ	NIAGMN_15435	0.72	-1.1
3,054,871	-	yhdJ	NIAGMN_15435	0.72	+0.5
3,054,871	-	yhdJ	NIAGMN_15435	0.72	-0.9
3,054,871	-	yhdJ	NIAGMN_15435	0.72	+1.2
3,054,920	+	yhdJ	NIAGMN_15435	0.78	+0.1
3,054,921	-	yhdJ	NIAGMN_15435	0.78	+1.5
3,054,921	-	yhdJ	NIAGMN_15435	0.78	-0.4
3,054,980	-	yhdJ	NIAGMN_15435	0.84	+0.2
3,054,988	+	yhdJ	NIAGMN_15435	0.85	+0.3
3,054,990	+	yhdJ	NIAGMN_15435	0.86	+1.6
3,054,991	-	yhdJ	NIAGMN_15435	0.86	+0.3
3,054,991	-	yhdJ	NIAGMN_15435	0.86	-0.1
3,054,991	-	yhdJ	NIAGMN_15435	0.86	-0.1
3,054,991	-	yhdJ	NIAGMN_15435	0.86	-0.8
3,055,027	+	yhdJ	NIAGMN_15435	0.90	-1.3
3,055,027	+	yhdJ	NIAGMN_15435	0.90	-2.2
3,055,028	-	yhdJ	NIAGMN_15435	0.90	+1.1
3,055,031	+				-1.1
3,055,075	+				-0.1
3,055,139	+				-1.4
3,055,139	+				-0.5
3,055,189	+				+0.0
3,055,190	-				-1.1
3,055,294	-	fis	NIAGMN_15440	0.31	+1.0
3,055,294	-	fis	NIAGMN_15440	0.31	-1.0
3,055,294	-	fis	NIAGMN_15440	0.31	-2.3
3,055,294	-	fis	NIAGMN_15440	0.31	-2.9
3,055,294	-	fis	NIAGMN_15440	0.31	-1.6
3,055,326	-	fis	NIAGMN_15440	0.42	-1.0
3,055,326	-	fis	NIAGMN_15440	0.42	-1.9
3,055,326	-	fis	NIAGMN_15440	0.42	-2.7
3,055,347	+	fis	NIAGMN_15440	0.49	-3.0
3,055,348	-	fis	NIAGMN_15440	0.49	-3.0
3,055,451	-	fis	NIAGMN_15440	0.84	-3.3
3,055,469	+				-2.6
3,055,470	-				-2.3
3,055,470	-				-0.6
3,055,498	+				-0.4
3,055,499	-				-1.4
3,055,515	+				-0.3
3,055,515	+				-0.7
3,055,516	-				+0.2
3,055,516	-				-2.6
3,055,543	+				+0.0
3,055,544	-				-1.3
3,055,633	+	dusB	NIAGMN_15445	0.11	-1.5
3,055,633	+	dusB	NIAGMN_15445	0.11	-1.5
3,055,634	-	dusB	NIAGMN_15445	0.11	-1.5
3,055,634	-	dusB	NIAGMN_15445	0.11	-2.6
3,055,649	+	dusB	NIAGMN_15445	0.13	+0.2
3,055,650	-	dusB	NIAGMN_15445	0.13	-2.3
3,055,650	-	dusB	NIAGMN_15445	0.13	-0.7
3,055,682	-	dusB	NIAGMN_15445	0.16	-1.4
3,055,772	-	dusB	NIAGMN_15445	0.26	-2.0
3,055,844	+	dusB	NIAGMN_15445	0.33	-0.8
3,055,844	+	dusB	NIAGMN_15445	0.33	-2.2
3,055,847	-	dusB	NIAGMN_15445	0.33	-2.1
3,055,923	-	dusB	NIAGMN_15445	0.41	-2.1
3,055,934	+	dusB	NIAGMN_15445	0.42	-0.8
3,055,935	-	dusB	NIAGMN_15445	0.43	-3.2
3,055,943	-	dusB	NIAGMN_15445	0.43	-1.3
3,056,043	-	dusB	NIAGMN_15445	0.54	-1.4
3,056,082	-	dusB	NIAGMN_15445	0.58	-1.3
3,056,205	-	dusB	NIAGMN_15445	0.70	-1.4
3,056,234	+	dusB	NIAGMN_15445	0.73	-1.6
3,056,237	+	dusB	NIAGMN_15445	0.74	-0.7
3,056,237	+	dusB	NIAGMN_15445	0.74	+1.0
3,056,237	+	dusB	NIAGMN_15445	0.74	+0.7
3,056,237	+	dusB	NIAGMN_15445	0.74	-3.4
3,056,238	-	dusB	NIAGMN_15445	0.74	-1.8
3,056,238	-	dusB	NIAGMN_15445	0.74	-0.4
3,056,238	-	dusB	NIAGMN_15445	0.74	-2.1
3,056,238	-	dusB	NIAGMN_15445	0.74	-0.2
3,056,238	-	dusB	NIAGMN_15445	0.74	-2.6
3,056,357	+	dusB	NIAGMN_15445	0.86	-2.4
3,056,377	-	dusB	NIAGMN_15445	0.88	-1.4
3,056,429	+				-2.9
3,056,430	-				-2.6
3,056,473	+				-1.6
3,056,473	+				-0.3
3,056,474	-				-1.3
3,056,474	-				-1.8
3,056,474	-				-1.6
3,056,528	+				-3.6
3,056,529	-				-0.8
3,056,529	-				-0.1
3,056,530	+				-0.7
3,056,530	+				-4.3
3,056,530	+				-0.1
3,056,531	-				-3.1
3,056,531	-				-1.1
3,056,533	+				-2.5
3,056,533	+				-4.7
3,056,534	-				-2.7
3,056,605	-				-1.9
3,056,819	+				-1.4
3,056,819	+				+0.4
3,056,819	+				-1.0
3,056,820	-				-0.6
3,056,820	-				+1.1
3,056,827	-				-0.2
3,056,835	+				-0.8
3,056,836	-				-0.2
3,056,891	+				+0.1
3,056,891	+				-1.4
3,056,892	-				-0.9
3,056,892	-				-0.9
3,056,929	-	prmA	NIAGMN_15450	0.13	+0.2
3,056,971	-	prmA	NIAGMN_15450	0.17	-0.7
3,056,971	-	prmA	NIAGMN_15450	0.17	+1.1
3,056,992	+	prmA	NIAGMN_15450	0.20	+2.1
3,056,992	+	prmA	NIAGMN_15450	0.20	+0.4
3,056,992	+	prmA	NIAGMN_15450	0.20	+0.2
3,056,993	-	prmA	NIAGMN_15450	0.20	-0.1
3,056,993	-	prmA	NIAGMN_15450	0.20	+0.1
3,056,993	-	prmA	NIAGMN_15450	0.20	-1.2
3,057,012	+	prmA	NIAGMN_15450	0.22	+0.0
3,057,062	+	prmA	NIAGMN_15450	0.28	+1.7
3,057,062	+	prmA	NIAGMN_15450	0.28	-0.5
3,057,063	-	prmA	NIAGMN_15450	0.28	-0.3
3,057,063	-	prmA	NIAGMN_15450	0.28	+1.0
3,057,063	-	prmA	NIAGMN_15450	0.28	+0.5
3,057,090	+	prmA	NIAGMN_15450	0.31	+0.8
3,057,090	+	prmA	NIAGMN_15450	0.31	+0.2
3,057,090	+	prmA	NIAGMN_15450	0.31	-0.7
3,057,090	+	prmA	NIAGMN_15450	0.31	+0.3
3,057,091	-	prmA	NIAGMN_15450	0.31	+0.6
3,057,229	+	prmA	NIAGMN_15450	0.47	-1.3
3,057,230	-	prmA	NIAGMN_15450	0.47	+0.5
3,057,307	+	prmA	NIAGMN_15450	0.55	+0.5
3,057,307	+	prmA	NIAGMN_15450	0.55	+0.2
3,057,307	+	prmA	NIAGMN_15450	0.55	+3.0
3,057,308	-	prmA	NIAGMN_15450	0.56	+1.1
3,057,308	-	prmA	NIAGMN_15450	0.56	-2.6
3,057,308	-	prmA	NIAGMN_15450	0.56	+0.6
3,057,308	-	prmA	NIAGMN_15450	0.56	+0.4
3,057,351	+	prmA	NIAGMN_15450	0.60	-0.1
3,057,351	+	prmA	NIAGMN_15450	0.60	-0.5
3,057,396	+	prmA	NIAGMN_15450	0.66	-0.5
3,057,423	+	prmA	NIAGMN_15450	0.69	-0.8
3,057,430	+	prmA	NIAGMN_15450	0.69	-1.3
3,057,431	-	prmA	NIAGMN_15450	0.70	+0.4