Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS10000

Experiment: D-Galactose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Galactose 2.5 mg/ml (C)
2,672,065	+				-0.7
2,672,065	+				+0.5
2,672,161	+				-0.3
2,672,179	-				-2.6
2,672,219	-				-0.5
2,672,260	+				+0.3
2,672,260	+				-2.0
2,672,261	-				-1.2
2,672,448	+		ABI39_RS09995	0.30	-0.5
2,672,540	+		ABI39_RS09995	0.42	-0.3
2,672,567	+		ABI39_RS09995	0.45	-0.0
2,672,605	+		ABI39_RS09995	0.50	-0.0
2,672,758	-		ABI39_RS09995	0.68	+0.2
2,672,762	+		ABI39_RS09995	0.69	-0.9
2,672,769	-		ABI39_RS09995	0.69	-1.9
2,673,007	+				-1.6
2,673,075	+				-0.3
2,673,075	+				-0.5
2,673,077	+				-1.0
2,673,078	-				-0.4
2,673,080	-				+0.7
2,673,135	-				-0.7
2,673,146	+		ABI39_RS10000	0.11	-0.8
2,673,154	+		ABI39_RS10000	0.11	-0.0
2,673,155	-		ABI39_RS10000	0.11	-1.0
2,673,155	-		ABI39_RS10000	0.11	-1.8
2,673,185	+		ABI39_RS10000	0.14	-1.3
2,673,248	-		ABI39_RS10000	0.21	-0.4
2,673,313	+		ABI39_RS10000	0.27	-0.0
2,673,333	+		ABI39_RS10000	0.29	-1.1
2,673,361	+		ABI39_RS10000	0.32	-0.9
2,673,364	+		ABI39_RS10000	0.32	-1.3
2,673,364	+		ABI39_RS10000	0.32	-0.5
2,673,392	+		ABI39_RS10000	0.35	-0.1
2,673,392	+		ABI39_RS10000	0.35	-0.9
2,673,399	-		ABI39_RS10000	0.36	-0.3
2,673,399	-		ABI39_RS10000	0.36	-1.7
2,673,405	+		ABI39_RS10000	0.37	+0.0
2,673,502	+		ABI39_RS10000	0.46	-1.3
2,673,599	+		ABI39_RS10000	0.56	-1.9
2,673,614	-		ABI39_RS10000	0.58	-1.2
2,673,769	+		ABI39_RS10000	0.73	-0.6
2,673,773	+		ABI39_RS10000	0.73	-0.5
2,673,774	-		ABI39_RS10000	0.74	-0.3
2,673,774	-		ABI39_RS10000	0.74	-0.2
2,673,776	-		ABI39_RS10000	0.74	-2.5
2,673,810	+		ABI39_RS10000	0.77	-0.8
2,673,890	-		ABI39_RS10000	0.85	-0.5
2,673,951	+				-0.8
2,673,952	-				+0.0
2,673,952	-				-3.7
2,674,010	-				-1.0
2,674,109	-		ABI39_RS10005	0.15	-1.4
2,674,113	-		ABI39_RS10005	0.16	+0.0
2,674,113	-		ABI39_RS10005	0.16	-0.7
2,674,117	+		ABI39_RS10005	0.17	-0.0
2,674,118	-		ABI39_RS10005	0.17	-0.5
2,674,140	+		ABI39_RS10005	0.22	+0.4
2,674,415	-		ABI39_RS10005	0.85	+0.2
2,674,470	-				-0.3
2,674,507	+				+0.6
2,674,519	-				-0.4
2,674,591	+				-0.3
2,674,693	-				+0.1
2,674,693	-				+0.2
2,674,733	+				-0.3
2,674,864	+		ABI39_RS10010	0.12	-0.9
2,674,885	+		ABI39_RS10010	0.15	-0.2
2,674,987	-		ABI39_RS10010	0.25	+0.4
2,674,987	-		ABI39_RS10010	0.25	+1.6