Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS03075

Experiment: D-Galactose 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS03070 and ABI39_RS03075 are separated by 275 nucleotidesABI39_RS03075 and ABI39_RS03080 are separated by 13 nucleotides ABI39_RS03070: ABI39_RS03070 - helix-turn-helix domain-containing protein, at 895,385 to 895,705 _RS03070 ABI39_RS03075: ABI39_RS03075 - hypothetical protein, at 895,981 to 898,830 _RS03075 ABI39_RS03080: ABI39_RS03080 - DEAD/DEAH box helicase, at 898,844 to 904,969 _RS03080 Position (kb) 895 896 897 898 899Strain fitness (log2 ratio) -1 0 1at 895.443 kb on + strand, within ABI39_RS03070at 895.447 kb on - strand, within ABI39_RS03070at 895.570 kb on - strand, within ABI39_RS03070at 895.640 kb on - strand, within ABI39_RS03070at 895.726 kb on - strandat 895.726 kb on - strandat 895.826 kb on - strandat 895.879 kb on - strandat 895.881 kb on + strandat 895.903 kb on + strandat 895.926 kb on - strandat 895.927 kb on + strandat 895.968 kb on - strandat 896.118 kb on + strandat 896.121 kb on + strandat 896.122 kb on - strandat 896.122 kb on - strandat 896.123 kb on + strandat 896.179 kb on - strandat 896.179 kb on - strandat 896.185 kb on - strandat 896.188 kb on + strandat 896.218 kb on - strandat 896.264 kb on - strandat 896.379 kb on + strand, within ABI39_RS03075at 896.380 kb on - strand, within ABI39_RS03075at 896.449 kb on + strand, within ABI39_RS03075at 896.453 kb on + strand, within ABI39_RS03075at 896.454 kb on - strand, within ABI39_RS03075at 896.454 kb on - strand, within ABI39_RS03075at 896.758 kb on + strand, within ABI39_RS03075at 896.758 kb on + strand, within ABI39_RS03075at 896.839 kb on - strand, within ABI39_RS03075at 896.897 kb on + strand, within ABI39_RS03075at 896.938 kb on + strand, within ABI39_RS03075at 896.938 kb on + strand, within ABI39_RS03075at 896.954 kb on + strand, within ABI39_RS03075at 896.954 kb on + strand, within ABI39_RS03075at 896.987 kb on + strand, within ABI39_RS03075at 896.988 kb on - strand, within ABI39_RS03075at 896.988 kb on - strand, within ABI39_RS03075at 897.076 kb on + strand, within ABI39_RS03075at 897.140 kb on + strand, within ABI39_RS03075at 897.195 kb on + strand, within ABI39_RS03075at 897.196 kb on - strand, within ABI39_RS03075at 897.223 kb on - strand, within ABI39_RS03075at 897.237 kb on + strand, within ABI39_RS03075at 897.261 kb on + strand, within ABI39_RS03075at 897.340 kb on - strand, within ABI39_RS03075at 897.403 kb on - strand, within ABI39_RS03075at 897.407 kb on + strand, within ABI39_RS03075at 897.523 kb on - strand, within ABI39_RS03075at 897.549 kb on + strand, within ABI39_RS03075at 897.550 kb on - strand, within ABI39_RS03075at 897.553 kb on + strand, within ABI39_RS03075at 897.633 kb on - strand, within ABI39_RS03075at 897.670 kb on - strand, within ABI39_RS03075at 897.733 kb on - strand, within ABI39_RS03075at 897.742 kb on - strand, within ABI39_RS03075at 897.745 kb on - strand, within ABI39_RS03075at 897.780 kb on + strand, within ABI39_RS03075at 897.944 kb on + strand, within ABI39_RS03075at 897.949 kb on + strand, within ABI39_RS03075at 897.949 kb on + strand, within ABI39_RS03075at 897.950 kb on - strand, within ABI39_RS03075at 897.998 kb on + strand, within ABI39_RS03075at 898.002 kb on - strand, within ABI39_RS03075at 898.057 kb on - strand, within ABI39_RS03075at 898.191 kb on + strand, within ABI39_RS03075at 898.213 kb on + strand, within ABI39_RS03075at 898.214 kb on - strand, within ABI39_RS03075at 898.285 kb on - strand, within ABI39_RS03075at 898.288 kb on + strand, within ABI39_RS03075at 898.288 kb on + strand, within ABI39_RS03075at 898.289 kb on - strand, within ABI39_RS03075at 898.397 kb on + strand, within ABI39_RS03075at 898.525 kb on - strand, within ABI39_RS03075at 898.606 kb on + strandat 898.671 kb on - strandat 898.671 kb on - strandat 898.676 kb on + strandat 898.833 kb on + strandat 898.834 kb on - strandat 898.840 kb on + strandat 898.869 kb on + strandat 898.871 kb on + strandat 898.934 kb on + strandat 898.937 kb on - strandat 898.937 kb on - strandat 898.943 kb on - strandat 899.013 kb on + strandat 899.021 kb on + strandat 899.116 kb on - strandat 899.262 kb on + strandat 899.263 kb on - strandat 899.263 kb on - strandat 899.263 kb on - strandat 899.267 kb on - strandat 899.377 kb on + strandat 899.379 kb on + strandat 899.379 kb on + strandat 899.482 kb on + strand, within ABI39_RS03080at 899.485 kb on - strand, within ABI39_RS03080at 899.487 kb on + strand, within ABI39_RS03080at 899.487 kb on + strand, within ABI39_RS03080at 899.487 kb on + strand, within ABI39_RS03080at 899.487 kb on + strand, within ABI39_RS03080at 899.494 kb on + strand, within ABI39_RS03080at 899.495 kb on - strand, within ABI39_RS03080at 899.659 kb on + strand, within ABI39_RS03080at 899.660 kb on - strand, within ABI39_RS03080at 899.707 kb on - strand, within ABI39_RS03080at 899.730 kb on + strand, within ABI39_RS03080at 899.817 kb on + strand, within ABI39_RS03080at 899.818 kb on - strand, within ABI39_RS03080

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 2.5 mg/ml (C)
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895,443 + ABI39_RS03070 0.18 +0.3
895,447 - ABI39_RS03070 0.19 +1.0
895,570 - ABI39_RS03070 0.58 -0.7
895,640 - ABI39_RS03070 0.79 +0.0
895,726 - +0.7
895,726 - -0.1
895,826 - +0.2
895,879 - +0.2
895,881 + -0.0
895,903 + +0.7
895,926 - +0.3
895,927 + +0.5
895,968 - +0.6
896,118 + +0.1
896,121 + +0.4
896,122 - -0.2
896,122 - +0.4
896,123 + +0.6
896,179 - +0.0
896,179 - -0.1
896,185 - -0.1
896,188 + +0.3
896,218 - +0.2
896,264 - +0.4
896,379 + ABI39_RS03075 0.14 +0.7
896,380 - ABI39_RS03075 0.14 -0.2
896,449 + ABI39_RS03075 0.16 +0.4
896,453 + ABI39_RS03075 0.17 +0.2
896,454 - ABI39_RS03075 0.17 +0.2
896,454 - ABI39_RS03075 0.17 +0.7
896,758 + ABI39_RS03075 0.27 -0.1
896,758 + ABI39_RS03075 0.27 +0.2
896,839 - ABI39_RS03075 0.30 -0.1
896,897 + ABI39_RS03075 0.32 -0.0
896,938 + ABI39_RS03075 0.34 +0.1
896,938 + ABI39_RS03075 0.34 +0.4
896,954 + ABI39_RS03075 0.34 +0.7
896,954 + ABI39_RS03075 0.34 +0.5
896,987 + ABI39_RS03075 0.35 +0.6
896,988 - ABI39_RS03075 0.35 +0.1
896,988 - ABI39_RS03075 0.35 +0.4
897,076 + ABI39_RS03075 0.38 +0.2
897,140 + ABI39_RS03075 0.41 +0.3
897,195 + ABI39_RS03075 0.43 +0.4
897,196 - ABI39_RS03075 0.43 -0.1
897,223 - ABI39_RS03075 0.44 +0.1
897,237 + ABI39_RS03075 0.44 -0.1
897,261 + ABI39_RS03075 0.45 +0.2
897,340 - ABI39_RS03075 0.48 +0.1
897,403 - ABI39_RS03075 0.50 +0.6
897,407 + ABI39_RS03075 0.50 +0.7
897,523 - ABI39_RS03075 0.54 -0.2
897,549 + ABI39_RS03075 0.55 +0.1
897,550 - ABI39_RS03075 0.55 +0.3
897,553 + ABI39_RS03075 0.55 +0.0
897,633 - ABI39_RS03075 0.58 +0.4
897,670 - ABI39_RS03075 0.59 +0.8
897,733 - ABI39_RS03075 0.61 +0.5
897,742 - ABI39_RS03075 0.62 +0.6
897,745 - ABI39_RS03075 0.62 +0.3
897,780 + ABI39_RS03075 0.63 -0.2
897,944 + ABI39_RS03075 0.69 +0.1
897,949 + ABI39_RS03075 0.69 +0.2
897,949 + ABI39_RS03075 0.69 -0.1
897,950 - ABI39_RS03075 0.69 +0.1
897,998 + ABI39_RS03075 0.71 -0.7
898,002 - ABI39_RS03075 0.71 +0.8
898,057 - ABI39_RS03075 0.73 -0.1
898,191 + ABI39_RS03075 0.78 -0.1
898,213 + ABI39_RS03075 0.78 +0.1
898,214 - ABI39_RS03075 0.78 +0.5
898,285 - ABI39_RS03075 0.81 +0.6
898,288 + ABI39_RS03075 0.81 -0.2
898,288 + ABI39_RS03075 0.81 +0.5
898,289 - ABI39_RS03075 0.81 +0.1
898,397 + ABI39_RS03075 0.85 +0.1
898,525 - ABI39_RS03075 0.89 +0.0
898,606 + -0.2
898,671 - +0.1
898,671 - +1.5
898,676 + +0.0
898,833 + -0.2
898,834 - +0.1
898,840 + -0.5
898,869 + +0.4
898,871 + +0.6
898,934 + +0.5
898,937 - -0.3
898,937 - +0.2
898,943 - +0.3
899,013 + +0.0
899,021 + +0.5
899,116 - -0.6
899,262 + +0.4
899,263 - +0.2
899,263 - +0.3
899,263 - +0.0
899,267 - +0.5
899,377 + -0.5
899,379 + +0.1
899,379 + -0.2
899,482 + ABI39_RS03080 0.10 +0.1
899,485 - ABI39_RS03080 0.10 +0.3
899,487 + ABI39_RS03080 0.10 +0.7
899,487 + ABI39_RS03080 0.10 -0.2
899,487 + ABI39_RS03080 0.10 +0.1
899,487 + ABI39_RS03080 0.10 +0.8
899,494 + ABI39_RS03080 0.11 +0.3
899,495 - ABI39_RS03080 0.11 +1.6
899,659 + ABI39_RS03080 0.13 +0.2
899,660 - ABI39_RS03080 0.13 +0.0
899,707 - ABI39_RS03080 0.14 +1.0
899,730 + ABI39_RS03080 0.14 -0.1
899,817 + ABI39_RS03080 0.16 +0.2
899,818 - ABI39_RS03080 0.16 -0.2

Or see this region's nucleotide sequence