Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS00100

Experiment: D-Galactose 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS00095 and ABI39_RS00100 are separated by 184 nucleotidesABI39_RS00100 and ABI39_RS00105 are separated by 137 nucleotidesABI39_RS00105 and ABI39_RS00110 are separated by 43 nucleotides ABI39_RS00095: ABI39_RS00095 - elongation factor G, at 20,277 to 22,436 _RS00095 ABI39_RS00100: ABI39_RS00100 - radical SAM family heme chaperone HemW, at 22,621 to 23,751 _RS00100 ABI39_RS00105: ABI39_RS00105 - hypothetical protein, at 23,889 to 24,080 _RS00105 ABI39_RS00110: ABI39_RS00110 - TonB-dependent receptor, at 24,124 to 26,775 _RS00110 Position (kb) 22 23 24Strain fitness (log2 ratio) -1 0 1at 21.657 kb on - strand, within ABI39_RS00095at 21.687 kb on - strand, within ABI39_RS00095at 21.861 kb on - strand, within ABI39_RS00095at 21.969 kb on - strand, within ABI39_RS00095at 22.000 kb on - strand, within ABI39_RS00095at 22.010 kb on - strand, within ABI39_RS00095at 22.146 kb on + strand, within ABI39_RS00095at 22.210 kb on - strand, within ABI39_RS00095at 22.429 kb on - strandat 22.443 kb on + strandat 22.443 kb on + strandat 22.457 kb on + strandat 22.570 kb on + strandat 22.580 kb on + strandat 22.581 kb on - strandat 22.644 kb on - strandat 22.670 kb on - strandat 22.714 kb on + strandat 22.714 kb on + strandat 22.715 kb on - strandat 22.740 kb on - strand, within ABI39_RS00100at 22.785 kb on - strand, within ABI39_RS00100at 22.786 kb on + strand, within ABI39_RS00100at 22.791 kb on - strand, within ABI39_RS00100at 22.862 kb on - strand, within ABI39_RS00100at 23.076 kb on + strand, within ABI39_RS00100at 23.095 kb on + strand, within ABI39_RS00100at 23.096 kb on - strand, within ABI39_RS00100at 23.096 kb on - strand, within ABI39_RS00100at 23.187 kb on + strand, within ABI39_RS00100at 23.232 kb on + strand, within ABI39_RS00100at 23.258 kb on + strand, within ABI39_RS00100at 23.419 kb on + strand, within ABI39_RS00100at 23.422 kb on - strand, within ABI39_RS00100at 23.447 kb on + strand, within ABI39_RS00100at 23.448 kb on - strand, within ABI39_RS00100at 23.448 kb on - strand, within ABI39_RS00100at 23.448 kb on - strand, within ABI39_RS00100at 23.460 kb on + strand, within ABI39_RS00100at 23.464 kb on + strand, within ABI39_RS00100at 23.465 kb on - strand, within ABI39_RS00100at 23.465 kb on - strand, within ABI39_RS00100at 23.466 kb on + strand, within ABI39_RS00100at 23.467 kb on - strand, within ABI39_RS00100at 23.468 kb on + strand, within ABI39_RS00100at 23.505 kb on - strand, within ABI39_RS00100at 23.521 kb on + strand, within ABI39_RS00100at 23.522 kb on - strand, within ABI39_RS00100at 23.531 kb on - strand, within ABI39_RS00100at 23.556 kb on - strand, within ABI39_RS00100at 23.556 kb on - strand, within ABI39_RS00100at 23.559 kb on + strand, within ABI39_RS00100at 23.559 kb on + strand, within ABI39_RS00100at 23.559 kb on + strand, within ABI39_RS00100at 23.709 kb on + strandat 23.776 kb on + strandat 23.859 kb on + strandat 23.860 kb on - strandat 23.865 kb on + strandat 23.908 kb on + strandat 23.950 kb on - strand, within ABI39_RS00105at 24.079 kb on - strandat 24.242 kb on + strandat 24.336 kb on + strandat 24.403 kb on - strand, within ABI39_RS00110at 24.435 kb on - strand, within ABI39_RS00110at 24.521 kb on + strand, within ABI39_RS00110at 24.666 kb on - strand, within ABI39_RS00110at 24.666 kb on - strand, within ABI39_RS00110at 24.679 kb on - strand, within ABI39_RS00110

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 2.5 mg/ml (C)
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21,657 - ABI39_RS00095 0.64 -0.4
21,687 - ABI39_RS00095 0.65 +0.4
21,861 - ABI39_RS00095 0.73 +1.7
21,969 - ABI39_RS00095 0.78 +1.3
22,000 - ABI39_RS00095 0.80 +0.2
22,010 - ABI39_RS00095 0.80 -0.4
22,146 + ABI39_RS00095 0.87 -0.1
22,210 - ABI39_RS00095 0.89 -0.3
22,429 - -0.1
22,443 + +0.3
22,443 + -0.6
22,457 + +0.5
22,570 + +0.3
22,580 + -0.0
22,581 - +1.0
22,644 - +1.1
22,670 - -0.6
22,714 + +0.5
22,714 + +0.0
22,715 - +0.4
22,740 - ABI39_RS00100 0.11 +0.5
22,785 - ABI39_RS00100 0.15 -0.0
22,786 + ABI39_RS00100 0.15 +0.1
22,791 - ABI39_RS00100 0.15 +0.4
22,862 - ABI39_RS00100 0.21 +0.9
23,076 + ABI39_RS00100 0.40 -0.6
23,095 + ABI39_RS00100 0.42 -1.0
23,096 - ABI39_RS00100 0.42 +1.3
23,096 - ABI39_RS00100 0.42 +0.5
23,187 + ABI39_RS00100 0.50 +0.0
23,232 + ABI39_RS00100 0.54 -1.0
23,258 + ABI39_RS00100 0.56 -0.8
23,419 + ABI39_RS00100 0.71 +1.6
23,422 - ABI39_RS00100 0.71 +0.1
23,447 + ABI39_RS00100 0.73 +0.2
23,448 - ABI39_RS00100 0.73 +0.4
23,448 - ABI39_RS00100 0.73 -0.2
23,448 - ABI39_RS00100 0.73 -0.0
23,460 + ABI39_RS00100 0.74 -0.8
23,464 + ABI39_RS00100 0.75 -0.4
23,465 - ABI39_RS00100 0.75 -0.0
23,465 - ABI39_RS00100 0.75 -0.0
23,466 + ABI39_RS00100 0.75 +0.8
23,467 - ABI39_RS00100 0.75 +0.2
23,468 + ABI39_RS00100 0.75 -0.1
23,505 - ABI39_RS00100 0.78 -0.2
23,521 + ABI39_RS00100 0.80 +0.5
23,522 - ABI39_RS00100 0.80 +1.3
23,531 - ABI39_RS00100 0.80 -0.0
23,556 - ABI39_RS00100 0.83 +0.7
23,556 - ABI39_RS00100 0.83 +0.7
23,559 + ABI39_RS00100 0.83 +0.4
23,559 + ABI39_RS00100 0.83 -0.1
23,559 + ABI39_RS00100 0.83 -0.4
23,709 + -0.2
23,776 + +0.7
23,859 + -0.4
23,860 - +0.8
23,865 + +0.2
23,908 + +1.0
23,950 - ABI39_RS00105 0.32 +0.5
24,079 - +0.3
24,242 + -0.1
24,336 + -0.4
24,403 - ABI39_RS00110 0.11 +0.3
24,435 - ABI39_RS00110 0.12 +1.0
24,521 + ABI39_RS00110 0.15 +0.2
24,666 - ABI39_RS00110 0.20 +0.2
24,666 - ABI39_RS00110 0.20 -0.9
24,679 - ABI39_RS00110 0.21 +0.0

Or see this region's nucleotide sequence