Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_00380 and NOLOHH_00385 overlap by 11 nucleotides NOLOHH_00385 and NOLOHH_00390 are separated by 8 nucleotides NOLOHH_00390 and NOLOHH_00395 are separated by 72 nucleotides NOLOHH_00395 and NOLOHH_00400 are separated by 596 nucleotides NOLOHH_00400 and hipB are separated by 14 nucleotides
NOLOHH_00380: NOLOHH_00380 - hypothetical protein, at 22,550 to 22,792
_00380
NOLOHH_00385: NOLOHH_00385 - hypothetical protein, at 22,782 to 23,051
_00385
NOLOHH_00390: NOLOHH_00390 - hypothetical protein, at 23,060 to 23,608
_00390
NOLOHH_00395: NOLOHH_00395 - molecular chaperone DnaJ, at 23,681 to 24,196
_00395
NOLOHH_00400: NOLOHH_00400 - DNA-binding protein, at 24,793 to 25,119
_00400
NOLOHH_00405: hipB - XRE family transcriptional regulator, at 25,134 to 25,415
hipB
Position (kb) 23
24
25 Strain fitness (log2 ratio) -2
-1
0
1 at 22.815 kb on - strand, within NOLOHH_00385 at 23.022 kb on - strand, within NOLOHH_00385 at 23.118 kb on - strand, within NOLOHH_00390 at 23.121 kb on - strand, within NOLOHH_00390 at 23.284 kb on - strand, within NOLOHH_00390 at 23.414 kb on - strand, within NOLOHH_00390 at 23.418 kb on - strand, within NOLOHH_00390 at 23.462 kb on + strand, within NOLOHH_00390 at 23.465 kb on - strand, within NOLOHH_00390 at 23.634 kb on - strand at 23.655 kb on + strand at 23.656 kb on - strand at 23.740 kb on - strand, within NOLOHH_00395 at 23.791 kb on + strand, within NOLOHH_00395 at 23.791 kb on + strand, within NOLOHH_00395 at 23.840 kb on - strand, within NOLOHH_00395 at 23.867 kb on - strand, within NOLOHH_00395 at 23.945 kb on - strand, within NOLOHH_00395 at 23.974 kb on - strand, within NOLOHH_00395 at 24.103 kb on - strand, within NOLOHH_00395 at 24.124 kb on - strand, within NOLOHH_00395 at 24.177 kb on - strand at 24.296 kb on - strand at 24.376 kb on + strand at 24.376 kb on + strand at 24.377 kb on - strand at 24.380 kb on + strand at 24.380 kb on + strand at 24.381 kb on - strand at 24.437 kb on - strand at 24.437 kb on - strand at 24.526 kb on + strand at 24.581 kb on - strand at 24.581 kb on - strand at 24.581 kb on - strand at 24.581 kb on - strand at 24.581 kb on - strand at 24.585 kb on + strand at 24.586 kb on - strand at 24.591 kb on + strand at 24.592 kb on - strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.608 kb on - strand at 24.608 kb on - strand at 24.608 kb on - strand at 24.613 kb on + strand at 24.614 kb on - strand at 24.626 kb on + strand at 24.626 kb on + strand at 24.626 kb on + strand at 24.626 kb on + strand at 24.627 kb on - strand at 24.627 kb on - strand at 24.627 kb on - strand at 24.627 kb on - strand at 24.631 kb on + strand at 24.703 kb on - strand at 24.703 kb on - strand at 24.706 kb on + strand at 24.794 kb on + strand at 24.794 kb on + strand at 24.795 kb on - strand at 24.795 kb on - strand at 24.840 kb on + strand, within NOLOHH_00400 at 24.840 kb on + strand, within NOLOHH_00400 at 24.840 kb on + strand, within NOLOHH_00400 at 24.840 kb on + strand, within NOLOHH_00400 at 24.841 kb on - strand, within NOLOHH_00400 at 24.841 kb on - strand, within NOLOHH_00400 at 24.841 kb on - strand, within NOLOHH_00400 at 24.841 kb on - strand, within NOLOHH_00400 at 24.841 kb on - strand, within NOLOHH_00400 at 24.841 kb on - strand, within NOLOHH_00400 at 24.871 kb on - strand, within NOLOHH_00400 at 24.894 kb on - strand, within NOLOHH_00400 at 24.897 kb on + strand, within NOLOHH_00400 at 24.897 kb on + strand, within NOLOHH_00400 at 24.898 kb on - strand, within NOLOHH_00400 at 24.898 kb on - strand, within NOLOHH_00400 at 24.959 kb on - strand, within NOLOHH_00400 at 24.959 kb on - strand, within NOLOHH_00400 at 24.967 kb on + strand, within NOLOHH_00400 at 24.968 kb on - strand, within NOLOHH_00400 at 24.968 kb on - strand, within NOLOHH_00400 at 24.968 kb on - strand, within NOLOHH_00400 at 24.988 kb on + strand, within NOLOHH_00400 at 24.989 kb on - strand, within NOLOHH_00400 at 25.006 kb on + strand, within NOLOHH_00400 at 25.006 kb on + strand, within NOLOHH_00400 at 25.006 kb on + strand, within NOLOHH_00400 at 25.007 kb on - strand, within NOLOHH_00400 at 25.007 kb on - strand, within NOLOHH_00400 at 25.031 kb on + strand, within NOLOHH_00400 at 25.031 kb on + strand, within NOLOHH_00400 at 25.032 kb on - strand, within NOLOHH_00400 at 25.104 kb on - strand at 25.104 kb on - strand at 25.138 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 22,815 - NOLOHH_00385 0.12 -2.1 23,022 - NOLOHH_00385 0.89 -0.8 23,118 - NOLOHH_00390 0.11 +0.0 23,121 - NOLOHH_00390 0.11 +0.2 23,284 - NOLOHH_00390 0.41 -0.0 23,414 - NOLOHH_00390 0.64 +0.0 23,418 - NOLOHH_00390 0.65 +1.0 23,462 + NOLOHH_00390 0.73 -2.1 23,465 - NOLOHH_00390 0.74 +0.3 23,634 - +0.5 23,655 + +1.1 23,656 - +0.4 23,740 - NOLOHH_00395 0.11 +0.4 23,791 + NOLOHH_00395 0.21 +0.3 23,791 + NOLOHH_00395 0.21 -0.2 23,840 - NOLOHH_00395 0.31 +0.0 23,867 - NOLOHH_00395 0.36 +0.2 23,945 - NOLOHH_00395 0.51 -0.7 23,974 - NOLOHH_00395 0.57 -0.8 24,103 - NOLOHH_00395 0.82 -0.1 24,124 - NOLOHH_00395 0.86 +0.5 24,177 - +0.8 24,296 - -0.3 24,376 + -0.9 24,376 + -0.2 24,377 - +0.2 24,380 + -0.1 24,380 + +0.7 24,381 - +0.4 24,437 - +1.0 24,437 - +0.6 24,526 + -0.9 24,581 - -0.9 24,581 - -0.1 24,581 - -0.4 24,581 - +0.2 24,581 - -0.7 24,585 + -0.6 24,586 - +0.6 24,591 + +0.1 24,592 - -0.3 24,596 + -0.1 24,596 + +0.5 24,596 + +0.3 24,596 + +0.0 24,596 + +0.1 24,596 + +0.3 24,596 + +0.7 24,597 - -0.7 24,597 - +0.6 24,597 - +0.4 24,597 - +0.5 24,597 - +0.4 24,597 - +0.9 24,597 - +1.6 24,597 - +0.3 24,597 - +0.5 24,597 - +0.0 24,597 - +0.2 24,597 - +0.7 24,597 - -0.1 24,597 - -0.2 24,597 - +0.5 24,602 + +0.3 24,602 + +0.4 24,602 + -0.4 24,602 + +0.5 24,602 + -0.2 24,602 + -0.2 24,602 + -0.3 24,602 + -0.0 24,603 - +0.7 24,603 - +0.6 24,603 - -0.2 24,603 - +0.1 24,603 - -0.2 24,603 - +0.2 24,603 - +0.1 24,603 - -0.3 24,603 - +0.2 24,603 - -0.5 24,603 - +1.7 24,603 - +0.2 24,603 - -0.4 24,603 - +0.2 24,608 - -0.2 24,608 - +0.0 24,608 - -0.4 24,613 + -0.7 24,614 - -0.1 24,626 + +0.2 24,626 + +0.1 24,626 + +1.2 24,626 + +0.6 24,627 - +0.5 24,627 - +0.2 24,627 - -0.1 24,627 - +0.1 24,631 + -0.3 24,703 - +0.3 24,703 - -0.3 24,706 + +0.3 24,794 + +0.1 24,794 + +0.0 24,795 - +0.3 24,795 - -0.2 24,840 + NOLOHH_00400 0.14 +0.0 24,840 + NOLOHH_00400 0.14 +0.8 24,840 + NOLOHH_00400 0.14 +0.3 24,840 + NOLOHH_00400 0.14 +0.7 24,841 - NOLOHH_00400 0.15 +0.1 24,841 - NOLOHH_00400 0.15 -0.3 24,841 - NOLOHH_00400 0.15 +0.0 24,841 - NOLOHH_00400 0.15 +0.1 24,841 - NOLOHH_00400 0.15 +0.5 24,841 - NOLOHH_00400 0.15 +0.5 24,871 - NOLOHH_00400 0.24 +0.3 24,894 - NOLOHH_00400 0.31 +0.1 24,897 + NOLOHH_00400 0.32 +0.1 24,897 + NOLOHH_00400 0.32 +0.1 24,898 - NOLOHH_00400 0.32 -1.0 24,898 - NOLOHH_00400 0.32 +1.7 24,959 - NOLOHH_00400 0.51 +0.5 24,959 - NOLOHH_00400 0.51 +0.4 24,967 + NOLOHH_00400 0.53 +1.0 24,968 - NOLOHH_00400 0.54 +1.0 24,968 - NOLOHH_00400 0.54 -0.0 24,968 - NOLOHH_00400 0.54 +0.4 24,988 + NOLOHH_00400 0.60 +0.6 24,989 - NOLOHH_00400 0.60 +0.0 25,006 + NOLOHH_00400 0.65 +0.5 25,006 + NOLOHH_00400 0.65 +0.2 25,006 + NOLOHH_00400 0.65 -0.2 25,007 - NOLOHH_00400 0.65 -0.5 25,007 - NOLOHH_00400 0.65 -0.9 25,031 + NOLOHH_00400 0.73 +0.5 25,031 + NOLOHH_00400 0.73 +0.8 25,032 - NOLOHH_00400 0.73 +0.4 25,104 - +0.1 25,104 - -0.6 25,138 + +0.3
Or see this region's nucleotide sequence