Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_23025 and NOLOHH_23030 overlap by 17 nucleotides NOLOHH_23030 and NOLOHH_23035 are separated by 342 nucleotides NOLOHH_23035 and NOLOHH_23040 are separated by 157 nucleotides NOLOHH_23040 and NOLOHH_23045 overlap by 4 nucleotides NOLOHH_23045 and NOLOHH_23050 are separated by 1 nucleotides
NOLOHH_23025: NOLOHH_23025 - DNA recombinase, at 4,531,134 to 4,532,036
_23025
NOLOHH_23030: NOLOHH_23030 - siphovirus Gp157 family protein, at 4,532,020 to 4,532,502
_23030
NOLOHH_23035: NOLOHH_23035 - DUF5405 domain-containing protein, at 4,532,845 to 4,533,126
_23035
NOLOHH_23040: NOLOHH_23040 - hypothetical protein, at 4,533,284 to 4,533,877
_23040
NOLOHH_23045: NOLOHH_23045 - hypothetical protein, at 4,533,874 to 4,534,113
_23045
NOLOHH_23050: NOLOHH_23050 - Ead/Ea22-like protein, at 4,534,115 to 4,534,630
_23050
Position (kb) 4532
4533
4534 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4531.991 kb on - strand at 4532.075 kb on + strand, within NOLOHH_23030 at 4532.514 kb on - strand at 4533.005 kb on + strand, within NOLOHH_23035 at 4533.006 kb on - strand, within NOLOHH_23035 at 4533.074 kb on + strand, within NOLOHH_23035 at 4533.300 kb on + strand at 4533.374 kb on + strand, within NOLOHH_23040 at 4533.454 kb on + strand, within NOLOHH_23040 at 4533.454 kb on + strand, within NOLOHH_23040 at 4533.475 kb on + strand, within NOLOHH_23040 at 4533.548 kb on - strand, within NOLOHH_23040 at 4533.548 kb on - strand, within NOLOHH_23040 at 4533.562 kb on + strand, within NOLOHH_23040 at 4533.654 kb on - strand, within NOLOHH_23040 at 4533.656 kb on + strand, within NOLOHH_23040 at 4533.657 kb on - strand, within NOLOHH_23040 at 4533.775 kb on + strand, within NOLOHH_23040 at 4533.775 kb on + strand, within NOLOHH_23040 at 4533.821 kb on - strand at 4533.821 kb on - strand at 4533.837 kb on + strand at 4533.837 kb on + strand at 4533.839 kb on + strand at 4533.938 kb on + strand, within NOLOHH_23045 at 4533.997 kb on + strand, within NOLOHH_23045 at 4533.998 kb on - strand, within NOLOHH_23045 at 4534.088 kb on + strand, within NOLOHH_23045
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 4,531,991 - +0.5 4,532,075 + NOLOHH_23030 0.11 -0.4 4,532,514 - +2.3 4,533,005 + NOLOHH_23035 0.57 -0.9 4,533,006 - NOLOHH_23035 0.57 -1.9 4,533,074 + NOLOHH_23035 0.81 -0.3 4,533,300 + -0.6 4,533,374 + NOLOHH_23040 0.15 -0.1 4,533,454 + NOLOHH_23040 0.29 -1.4 4,533,454 + NOLOHH_23040 0.29 +0.4 4,533,475 + NOLOHH_23040 0.32 +0.3 4,533,548 - NOLOHH_23040 0.44 -1.9 4,533,548 - NOLOHH_23040 0.44 -0.4 4,533,562 + NOLOHH_23040 0.47 -0.7 4,533,654 - NOLOHH_23040 0.62 -1.1 4,533,656 + NOLOHH_23040 0.63 -1.1 4,533,657 - NOLOHH_23040 0.63 +0.1 4,533,775 + NOLOHH_23040 0.83 +0.0 4,533,775 + NOLOHH_23040 0.83 +0.5 4,533,821 - +0.1 4,533,821 - -0.2 4,533,837 + +0.5 4,533,837 + -0.1 4,533,839 + +0.3 4,533,938 + NOLOHH_23045 0.27 +2.2 4,533,997 + NOLOHH_23045 0.51 +1.7 4,533,998 - NOLOHH_23045 0.52 +1.3 4,534,088 + NOLOHH_23045 0.89 +1.2
Or see this region's nucleotide sequence