Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt putP and NOLOHH_21500 are separated by 158 nucleotides NOLOHH_21500 and putA are separated by 54 nucleotides
NOLOHH_21495: putP - sodium/proline symporter PutP, at 4,223,003 to 4,224,511
putP
NOLOHH_21500: NOLOHH_21500 - hypothetical protein, at 4,224,670 to 4,224,879
_21500
NOLOHH_21505: putA - trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase, at 4,224,934 to 4,228,896
putA
Position (kb)
4224
4225 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4223.689 kb on + strand, within putP at 4223.696 kb on - strand, within putP at 4223.696 kb on - strand, within putP at 4223.738 kb on - strand, within putP at 4223.769 kb on + strand, within putP at 4223.770 kb on - strand, within putP at 4223.770 kb on - strand, within putP at 4223.828 kb on - strand, within putP at 4223.828 kb on - strand, within putP at 4223.828 kb on - strand, within putP at 4223.946 kb on - strand, within putP at 4223.946 kb on - strand, within putP at 4223.951 kb on - strand, within putP at 4223.992 kb on - strand, within putP at 4224.094 kb on - strand, within putP at 4224.094 kb on - strand, within putP at 4224.131 kb on - strand, within putP at 4224.175 kb on - strand, within putP at 4224.469 kb on + strand at 4224.470 kb on - strand at 4224.470 kb on - strand at 4224.472 kb on - strand at 4224.472 kb on - strand at 4224.472 kb on - strand at 4224.502 kb on + strand at 4224.503 kb on - strand at 4224.506 kb on - strand at 4224.514 kb on - strand at 4224.514 kb on - strand at 4224.531 kb on - strand at 4224.559 kb on - strand at 4224.561 kb on - strand at 4224.591 kb on - strand at 4224.688 kb on - strand at 4224.773 kb on - strand, within NOLOHH_21500 at 4224.928 kb on - strand at 4224.987 kb on + strand at 4224.988 kb on - strand at 4224.988 kb on - strand at 4225.032 kb on + strand at 4225.077 kb on + strand at 4225.229 kb on - strand at 4225.257 kb on + strand at 4225.257 kb on + strand at 4225.319 kb on - strand at 4225.319 kb on - strand at 4225.342 kb on - strand, within putA at 4225.372 kb on - strand, within putA at 4225.789 kb on - strand, within putA at 4225.831 kb on + strand, within putA at 4225.831 kb on + strand, within putA at 4225.831 kb on + strand, within putA at 4225.831 kb on + strand, within putA at 4225.831 kb on + strand, within putA at 4225.831 kb on + strand, within putA at 4225.831 kb on + strand, within putA at 4225.831 kb on + strand, within putA at 4225.831 kb on + strand, within putA at 4225.831 kb on + strand, within putA at 4225.832 kb on - strand, within putA at 4225.832 kb on - strand, within putA at 4225.833 kb on + strand, within putA at 4225.870 kb on - strand, within putA
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 4,223,689 + putP NOLOHH_21495 0.45 -1.3 4,223,696 - putP NOLOHH_21495 0.46 +0.6 4,223,696 - putP NOLOHH_21495 0.46 -0.1 4,223,738 - putP NOLOHH_21495 0.49 -0.8 4,223,769 + putP NOLOHH_21495 0.51 -0.0 4,223,770 - putP NOLOHH_21495 0.51 -0.5 4,223,770 - putP NOLOHH_21495 0.51 -0.5 4,223,828 - putP NOLOHH_21495 0.55 +0.1 4,223,828 - putP NOLOHH_21495 0.55 +1.2 4,223,828 - putP NOLOHH_21495 0.55 +0.1 4,223,946 - putP NOLOHH_21495 0.62 -2.2 4,223,946 - putP NOLOHH_21495 0.62 -0.5 4,223,951 - putP NOLOHH_21495 0.63 -2.0 4,223,992 - putP NOLOHH_21495 0.66 +0.8 4,224,094 - putP NOLOHH_21495 0.72 +1.7 4,224,094 - putP NOLOHH_21495 0.72 +0.0 4,224,131 - putP NOLOHH_21495 0.75 +1.2 4,224,175 - putP NOLOHH_21495 0.78 +0.3 4,224,469 + +0.0 4,224,470 - +0.4 4,224,470 - +0.3 4,224,472 - -0.6 4,224,472 - -1.8 4,224,472 - +0.4 4,224,502 + +1.3 4,224,503 - -0.5 4,224,506 - -0.1 4,224,514 - -0.0 4,224,514 - +0.2 4,224,531 - +0.5 4,224,559 - -0.3 4,224,561 - +0.3 4,224,591 - -0.5 4,224,688 - -0.1 4,224,773 - NOLOHH_21500 0.49 -1.2 4,224,928 - -1.1 4,224,987 + +1.1 4,224,988 - +1.5 4,224,988 - +0.0 4,225,032 + +0.3 4,225,077 + -0.1 4,225,229 - +0.4 4,225,257 + +1.8 4,225,257 + +1.7 4,225,319 - -1.4 4,225,319 - +0.6 4,225,342 - putA NOLOHH_21505 0.10 -0.2 4,225,372 - putA NOLOHH_21505 0.11 +1.7 4,225,789 - putA NOLOHH_21505 0.22 -0.4 4,225,831 + putA NOLOHH_21505 0.23 +1.4 4,225,831 + putA NOLOHH_21505 0.23 +0.4 4,225,831 + putA NOLOHH_21505 0.23 +0.3 4,225,831 + putA NOLOHH_21505 0.23 -1.7 4,225,831 + putA NOLOHH_21505 0.23 -0.0 4,225,831 + putA NOLOHH_21505 0.23 +0.7 4,225,831 + putA NOLOHH_21505 0.23 +0.7 4,225,831 + putA NOLOHH_21505 0.23 -1.2 4,225,831 + putA NOLOHH_21505 0.23 -0.1 4,225,831 + putA NOLOHH_21505 0.23 -0.9 4,225,832 - putA NOLOHH_21505 0.23 +0.4 4,225,832 - putA NOLOHH_21505 0.23 +1.1 4,225,833 + putA NOLOHH_21505 0.23 -0.5 4,225,870 - putA NOLOHH_21505 0.24 -0.4
Or see this region's nucleotide sequence