Strain Fitness in Escherichia coli ECOR27 around NOLOHH_21500

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntputP and NOLOHH_21500 are separated by 158 nucleotidesNOLOHH_21500 and putA are separated by 54 nucleotides NOLOHH_21495: putP - sodium/proline symporter PutP, at 4,223,003 to 4,224,511 putP NOLOHH_21500: NOLOHH_21500 - hypothetical protein, at 4,224,670 to 4,224,879 _21500 NOLOHH_21505: putA - trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase, at 4,224,934 to 4,228,896 putA Position (kb) 4224 4225Strain fitness (log2 ratio) -2 -1 0 1 2at 4223.689 kb on + strand, within putPat 4223.696 kb on - strand, within putPat 4223.696 kb on - strand, within putPat 4223.738 kb on - strand, within putPat 4223.769 kb on + strand, within putPat 4223.770 kb on - strand, within putPat 4223.770 kb on - strand, within putPat 4223.828 kb on - strand, within putPat 4223.828 kb on - strand, within putPat 4223.828 kb on - strand, within putPat 4223.946 kb on - strand, within putPat 4223.946 kb on - strand, within putPat 4223.951 kb on - strand, within putPat 4223.992 kb on - strand, within putPat 4224.094 kb on - strand, within putPat 4224.094 kb on - strand, within putPat 4224.131 kb on - strand, within putPat 4224.175 kb on - strand, within putPat 4224.469 kb on + strandat 4224.470 kb on - strandat 4224.470 kb on - strandat 4224.472 kb on - strandat 4224.472 kb on - strandat 4224.472 kb on - strandat 4224.502 kb on + strandat 4224.503 kb on - strandat 4224.506 kb on - strandat 4224.514 kb on - strandat 4224.514 kb on - strandat 4224.531 kb on - strandat 4224.559 kb on - strandat 4224.561 kb on - strandat 4224.591 kb on - strandat 4224.688 kb on - strandat 4224.773 kb on - strand, within NOLOHH_21500at 4224.928 kb on - strandat 4224.987 kb on + strandat 4224.988 kb on - strandat 4224.988 kb on - strandat 4225.032 kb on + strandat 4225.077 kb on + strandat 4225.229 kb on - strandat 4225.257 kb on + strandat 4225.257 kb on + strandat 4225.319 kb on - strandat 4225.319 kb on - strandat 4225.342 kb on - strand, within putAat 4225.372 kb on - strand, within putAat 4225.789 kb on - strand, within putAat 4225.831 kb on + strand, within putAat 4225.831 kb on + strand, within putAat 4225.831 kb on + strand, within putAat 4225.831 kb on + strand, within putAat 4225.831 kb on + strand, within putAat 4225.831 kb on + strand, within putAat 4225.831 kb on + strand, within putAat 4225.831 kb on + strand, within putAat 4225.831 kb on + strand, within putAat 4225.831 kb on + strand, within putAat 4225.832 kb on - strand, within putAat 4225.832 kb on - strand, within putAat 4225.833 kb on + strand, within putAat 4225.870 kb on - strand, within putA

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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4,223,689 + putP NOLOHH_21495 0.45 -1.3
4,223,696 - putP NOLOHH_21495 0.46 +0.6
4,223,696 - putP NOLOHH_21495 0.46 -0.1
4,223,738 - putP NOLOHH_21495 0.49 -0.8
4,223,769 + putP NOLOHH_21495 0.51 -0.0
4,223,770 - putP NOLOHH_21495 0.51 -0.5
4,223,770 - putP NOLOHH_21495 0.51 -0.5
4,223,828 - putP NOLOHH_21495 0.55 +0.1
4,223,828 - putP NOLOHH_21495 0.55 +1.2
4,223,828 - putP NOLOHH_21495 0.55 +0.1
4,223,946 - putP NOLOHH_21495 0.62 -2.2
4,223,946 - putP NOLOHH_21495 0.62 -0.5
4,223,951 - putP NOLOHH_21495 0.63 -2.0
4,223,992 - putP NOLOHH_21495 0.66 +0.8
4,224,094 - putP NOLOHH_21495 0.72 +1.7
4,224,094 - putP NOLOHH_21495 0.72 +0.0
4,224,131 - putP NOLOHH_21495 0.75 +1.2
4,224,175 - putP NOLOHH_21495 0.78 +0.3
4,224,469 + +0.0
4,224,470 - +0.4
4,224,470 - +0.3
4,224,472 - -0.6
4,224,472 - -1.8
4,224,472 - +0.4
4,224,502 + +1.3
4,224,503 - -0.5
4,224,506 - -0.1
4,224,514 - -0.0
4,224,514 - +0.2
4,224,531 - +0.5
4,224,559 - -0.3
4,224,561 - +0.3
4,224,591 - -0.5
4,224,688 - -0.1
4,224,773 - NOLOHH_21500 0.49 -1.2
4,224,928 - -1.1
4,224,987 + +1.1
4,224,988 - +1.5
4,224,988 - +0.0
4,225,032 + +0.3
4,225,077 + -0.1
4,225,229 - +0.4
4,225,257 + +1.8
4,225,257 + +1.7
4,225,319 - -1.4
4,225,319 - +0.6
4,225,342 - putA NOLOHH_21505 0.10 -0.2
4,225,372 - putA NOLOHH_21505 0.11 +1.7
4,225,789 - putA NOLOHH_21505 0.22 -0.4
4,225,831 + putA NOLOHH_21505 0.23 +1.4
4,225,831 + putA NOLOHH_21505 0.23 +0.4
4,225,831 + putA NOLOHH_21505 0.23 +0.3
4,225,831 + putA NOLOHH_21505 0.23 -1.7
4,225,831 + putA NOLOHH_21505 0.23 -0.0
4,225,831 + putA NOLOHH_21505 0.23 +0.7
4,225,831 + putA NOLOHH_21505 0.23 +0.7
4,225,831 + putA NOLOHH_21505 0.23 -1.2
4,225,831 + putA NOLOHH_21505 0.23 -0.1
4,225,831 + putA NOLOHH_21505 0.23 -0.9
4,225,832 - putA NOLOHH_21505 0.23 +0.4
4,225,832 - putA NOLOHH_21505 0.23 +1.1
4,225,833 + putA NOLOHH_21505 0.23 -0.5
4,225,870 - putA NOLOHH_21505 0.24 -0.4

Or see this region's nucleotide sequence