Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cgsD and cgsE are separated by 4 nucleotides cgsE and cgsF are separated by 24 nucleotides cgsF and cgsG are separated by 26 nucleotides cgsG and ycdZ are separated by 63 nucleotides ycdZ and ycdY are separated by 71 nucleotides
NOLOHH_21375: cgsD - transcriptional regulator CsgD, at 4,200,856 to 4,201,506
cgsD
NOLOHH_21380: cgsE - curli production assembly/transport protein CsgE, at 4,201,511 to 4,201,900
cgsE
NOLOHH_21385: cgsF - curli production assembly/transport protein CsgF, at 4,201,925 to 4,202,341
cgsF
NOLOHH_21390: cgsG - curli production assembly/transport protein CsgG, at 4,202,368 to 4,203,201
cgsG
NOLOHH_21395: ycdZ - Inner membrane protein YcdZ, at 4,203,265 to 4,203,786
ycdZ
NOLOHH_21400: ycdY - molecular chaperone YcdY, at 4,203,858 to 4,204,412
ycdY
Position (kb) 4202
4203
4204 Strain fitness (log2 ratio) -1
0
1
2 at 4201.524 kb on + strand at 4201.851 kb on + strand, within cgsE at 4201.960 kb on + strand at 4202.574 kb on + strand, within cgsG at 4202.575 kb on - strand, within cgsG at 4202.772 kb on + strand, within cgsG at 4202.772 kb on + strand, within cgsG at 4202.954 kb on + strand, within cgsG at 4202.954 kb on + strand, within cgsG at 4202.962 kb on + strand, within cgsG at 4203.105 kb on + strand, within cgsG at 4203.177 kb on + strand at 4203.177 kb on + strand at 4203.222 kb on - strand at 4203.359 kb on - strand, within ycdZ at 4203.359 kb on - strand, within ycdZ at 4203.478 kb on - strand, within ycdZ at 4203.478 kb on - strand, within ycdZ at 4203.513 kb on - strand, within ycdZ at 4203.513 kb on - strand, within ycdZ at 4203.583 kb on - strand, within ycdZ at 4203.677 kb on - strand, within ycdZ at 4203.677 kb on - strand, within ycdZ at 4203.739 kb on - strand at 4203.748 kb on + strand at 4203.748 kb on + strand at 4203.749 kb on - strand at 4203.749 kb on - strand at 4204.176 kb on - strand, within ycdY
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 4,201,524 + -1.0 4,201,851 + cgsE NOLOHH_21380 0.87 -0.0 4,201,960 + -0.2 4,202,574 + cgsG NOLOHH_21390 0.25 -0.2 4,202,575 - cgsG NOLOHH_21390 0.25 -0.3 4,202,772 + cgsG NOLOHH_21390 0.48 +0.1 4,202,772 + cgsG NOLOHH_21390 0.48 -0.5 4,202,954 + cgsG NOLOHH_21390 0.70 -0.5 4,202,954 + cgsG NOLOHH_21390 0.70 -0.8 4,202,962 + cgsG NOLOHH_21390 0.71 -1.2 4,203,105 + cgsG NOLOHH_21390 0.88 +0.8 4,203,177 + -0.9 4,203,177 + +1.1 4,203,222 - -0.5 4,203,359 - ycdZ NOLOHH_21395 0.18 -0.3 4,203,359 - ycdZ NOLOHH_21395 0.18 +1.2 4,203,478 - ycdZ NOLOHH_21395 0.41 -0.9 4,203,478 - ycdZ NOLOHH_21395 0.41 -1.0 4,203,513 - ycdZ NOLOHH_21395 0.48 +0.3 4,203,513 - ycdZ NOLOHH_21395 0.48 -1.2 4,203,583 - ycdZ NOLOHH_21395 0.61 -1.3 4,203,677 - ycdZ NOLOHH_21395 0.79 +0.6 4,203,677 - ycdZ NOLOHH_21395 0.79 +0.7 4,203,739 - -0.7 4,203,748 + -1.1 4,203,748 + +1.4 4,203,749 - -0.8 4,203,749 - +1.0 4,204,176 - ycdY NOLOHH_21400 0.57 +2.4
Or see this region's nucleotide sequence