Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nhaB and dsbB are separated by 145 nucleotides dsbB and umuC are separated by 45 nucleotides umuC and umuD overlap by 1 nucleotides umuD and NOLOHH_20765 are separated by 372 nucleotides
NOLOHH_20740: nhaB - Na(+)/H(+) antiporter NhaB, at 4,084,432 to 4,085,973
nhaB
NOLOHH_20745: dsbB - disulfide bond formation protein DsbB, at 4,086,119 to 4,086,649
dsbB
NOLOHH_20750: umuC - DNA polymerase V catalytic protein, at 4,086,695 to 4,087,963
umuC
NOLOHH_20755: umuD - Protein UmuD, at 4,087,963 to 4,088,382
umuD
NOLOHH_20765: NOLOHH_20765 - hemolysin activation protein, at 4,088,755 to 4,089,264
_20765
Position (kb)
4086
4087
4088 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4085.872 kb on + strand at 4085.872 kb on + strand at 4085.872 kb on + strand at 4085.992 kb on - strand at 4085.993 kb on + strand at 4085.993 kb on + strand at 4085.993 kb on + strand at 4085.993 kb on + strand at 4085.994 kb on - strand at 4086.022 kb on - strand at 4086.095 kb on + strand at 4086.101 kb on + strand at 4086.102 kb on - strand at 4086.118 kb on + strand at 4086.178 kb on + strand, within dsbB at 4086.254 kb on + strand, within dsbB at 4086.333 kb on + strand, within dsbB at 4086.333 kb on + strand, within dsbB at 4086.333 kb on + strand, within dsbB at 4086.333 kb on + strand, within dsbB at 4086.333 kb on + strand, within dsbB at 4086.353 kb on + strand, within dsbB at 4086.355 kb on + strand, within dsbB at 4086.384 kb on - strand, within dsbB at 4086.575 kb on + strand, within dsbB at 4086.575 kb on + strand, within dsbB at 4086.691 kb on - strand at 4086.697 kb on - strand at 4086.697 kb on - strand at 4086.818 kb on - strand at 4086.885 kb on - strand, within umuC at 4087.057 kb on - strand, within umuC at 4087.310 kb on - strand, within umuC at 4087.735 kb on - strand, within umuC at 4087.754 kb on - strand, within umuC at 4087.817 kb on - strand, within umuC at 4087.868 kb on - strand at 4087.933 kb on - strand at 4088.014 kb on - strand, within umuD at 4088.081 kb on - strand, within umuD at 4088.229 kb on - strand, within umuD at 4088.286 kb on - strand, within umuD at 4088.286 kb on - strand, within umuD at 4088.383 kb on - strand at 4088.383 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 4,085,872 + +0.5 4,085,872 + +1.3 4,085,872 + +1.2 4,085,992 - +0.4 4,085,993 + +0.4 4,085,993 + +0.0 4,085,993 + -1.4 4,085,993 + -0.3 4,085,994 - +0.3 4,086,022 - +0.6 4,086,095 + +0.3 4,086,101 + +0.5 4,086,102 - +0.7 4,086,118 + -1.4 4,086,178 + dsbB NOLOHH_20745 0.11 +0.4 4,086,254 + dsbB NOLOHH_20745 0.25 +1.1 4,086,333 + dsbB NOLOHH_20745 0.40 -0.6 4,086,333 + dsbB NOLOHH_20745 0.40 -1.8 4,086,333 + dsbB NOLOHH_20745 0.40 -0.1 4,086,333 + dsbB NOLOHH_20745 0.40 +0.3 4,086,333 + dsbB NOLOHH_20745 0.40 -0.0 4,086,353 + dsbB NOLOHH_20745 0.44 +0.9 4,086,355 + dsbB NOLOHH_20745 0.44 -0.1 4,086,384 - dsbB NOLOHH_20745 0.50 +1.1 4,086,575 + dsbB NOLOHH_20745 0.86 -0.0 4,086,575 + dsbB NOLOHH_20745 0.86 -0.4 4,086,691 - +0.7 4,086,697 - +1.3 4,086,697 - +0.4 4,086,818 - +0.0 4,086,885 - umuC NOLOHH_20750 0.15 -1.3 4,087,057 - umuC NOLOHH_20750 0.29 -0.8 4,087,310 - umuC NOLOHH_20750 0.48 +0.1 4,087,735 - umuC NOLOHH_20750 0.82 -1.8 4,087,754 - umuC NOLOHH_20750 0.83 -0.2 4,087,817 - umuC NOLOHH_20750 0.88 +1.7 4,087,868 - +1.2 4,087,933 - +3.0 4,088,014 - umuD NOLOHH_20755 0.12 +0.1 4,088,081 - umuD NOLOHH_20755 0.28 -0.1 4,088,229 - umuD NOLOHH_20755 0.63 +0.0 4,088,286 - umuD NOLOHH_20755 0.77 +0.8 4,088,286 - umuD NOLOHH_20755 0.77 +1.0 4,088,383 - -0.8 4,088,383 - -0.3
Or see this region's nucleotide sequence