Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt atoD and NOLOHH_18995 are separated by 2 nucleotides NOLOHH_18995 and NOLOHH_19000 are separated by 9 nucleotides NOLOHH_19000 and NOLOHH_19005 overlap by 11 nucleotides NOLOHH_19005 and gntT are separated by 45 nucleotides
NOLOHH_18990: atoD - succinyl-CoA--3-ketoacid-CoA transferase, at 3,732,311 to 3,733,018
atoD
NOLOHH_18995: NOLOHH_18995 - succinyl-CoA--3-ketoacid-CoA transferase, at 3,733,021 to 3,733,677
_18995
NOLOHH_19000: NOLOHH_19000 - succinyl-CoA--3-ketoacid-CoA transferase, at 3,733,687 to 3,734,892
_19000
NOLOHH_19005: NOLOHH_19005 - 3-hydroxybutyryl-CoA dehydrogenase, at 3,734,882 to 3,735,805
_19005
NOLOHH_19010: gntT - transporter, at 3,735,851 to 3,737,242
gntT
Position (kb) 3733
3734
3735 Strain fitness (log2 ratio) -1
0
1
2 at 3732.740 kb on + strand, within atoD at 3732.741 kb on - strand, within atoD at 3733.075 kb on + strand at 3733.120 kb on + strand, within NOLOHH_18995 at 3733.218 kb on + strand, within NOLOHH_18995 at 3733.946 kb on + strand, within NOLOHH_19000 at 3734.012 kb on + strand, within NOLOHH_19000 at 3734.012 kb on + strand, within NOLOHH_19000 at 3734.013 kb on - strand, within NOLOHH_19000 at 3734.013 kb on - strand, within NOLOHH_19000 at 3734.013 kb on - strand, within NOLOHH_19000 at 3734.740 kb on - strand, within NOLOHH_19000 at 3735.183 kb on - strand, within NOLOHH_19005 at 3735.619 kb on + strand, within NOLOHH_19005 at 3735.672 kb on + strand, within NOLOHH_19005 at 3735.673 kb on - strand, within NOLOHH_19005 at 3735.756 kb on - strand at 3735.827 kb on + strand at 3735.828 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 3,732,740 + atoD NOLOHH_18990 0.61 +0.4 3,732,741 - atoD NOLOHH_18990 0.61 +0.8 3,733,075 + +1.0 3,733,120 + NOLOHH_18995 0.15 +0.0 3,733,218 + NOLOHH_18995 0.30 +0.2 3,733,946 + NOLOHH_19000 0.21 -0.2 3,734,012 + NOLOHH_19000 0.27 -0.5 3,734,012 + NOLOHH_19000 0.27 -1.5 3,734,013 - NOLOHH_19000 0.27 +0.9 3,734,013 - NOLOHH_19000 0.27 -1.6 3,734,013 - NOLOHH_19000 0.27 +1.6 3,734,740 - NOLOHH_19000 0.87 +0.3 3,735,183 - NOLOHH_19005 0.33 +0.4 3,735,619 + NOLOHH_19005 0.80 -0.6 3,735,672 + NOLOHH_19005 0.85 -1.3 3,735,673 - NOLOHH_19005 0.86 +1.2 3,735,756 - +0.2 3,735,827 + +2.2 3,735,828 - +0.2
Or see this region's nucleotide sequence