Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18660

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydeJ and ydeI are separated by 275 nucleotidesydeI and dgcZ are separated by 254 nucleotidesdgcZ and mgtS are separated by 218 nucleotidesmgtS and ydeE are separated by 126 nucleotides NOLOHH_18650: ydeJ - 2-oxo-tetronate isomerase, at 3,653,042 to 3,653,560 ydeJ NOLOHH_18655: ydeI - YdeI family stress tolerance OB fold protein, at 3,653,836 to 3,654,228 ydeI NOLOHH_18660: dgcZ - diguanylate cyclase DgcZ, at 3,654,483 to 3,655,373 dgcZ NOLOHH_18670: mgtS - protein MgtS, at 3,655,592 to 3,655,687 mgtS NOLOHH_18675: ydeE - efflux MFS transporter YdeE, at 3,655,814 to 3,657,001 ydeE Position (kb) 3654 3655 3656Strain fitness (log2 ratio) -1 0 1at 3653.581 kb on - strandat 3653.770 kb on - strandat 3653.804 kb on + strandat 3654.964 kb on + strand, within dgcZat 3655.031 kb on - strand, within dgcZat 3655.473 kb on + strandat 3655.569 kb on - strandat 3655.727 kb on - strandat 3656.044 kb on - strand, within ydeEat 3656.227 kb on + strand, within ydeEat 3656.227 kb on + strand, within ydeE

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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3,653,581 - +1.4
3,653,770 - +0.9
3,653,804 + +1.6
3,654,964 + dgcZ NOLOHH_18660 0.54 -1.2
3,655,031 - dgcZ NOLOHH_18660 0.62 -1.1
3,655,473 + +0.1
3,655,569 - -0.5
3,655,727 - -0.1
3,656,044 - ydeE NOLOHH_18675 0.19 +0.2
3,656,227 + ydeE NOLOHH_18675 0.35 -1.0
3,656,227 + ydeE NOLOHH_18675 0.35 -0.5

Or see this region's nucleotide sequence