Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17975

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydhF and sodC are separated by 80 nucleotidessodC and ydhK are separated by 0 nucleotides NOLOHH_17970: ydhF - Oxidoreductase YdhF, at 3,527,584 to 3,528,480 ydhF NOLOHH_17975: sodC - superoxide dismutase [Cu-Zn] SodC, at 3,528,561 to 3,529,082 sodC NOLOHH_17980: ydhK - Uncharacterized transporter YdhK, at 3,529,083 to 3,531,095 ydhK Position (kb) 3528 3529 3530Strain fitness (log2 ratio) -2 -1 0 1 2at 3527.562 kb on + strandat 3527.878 kb on + strand, within ydhFat 3527.928 kb on + strand, within ydhFat 3528.179 kb on + strand, within ydhFat 3528.179 kb on + strand, within ydhFat 3528.293 kb on + strand, within ydhFat 3528.375 kb on + strand, within ydhFat 3528.524 kb on + strandat 3528.530 kb on + strandat 3528.560 kb on + strandat 3529.016 kb on + strand, within sodCat 3529.017 kb on - strand, within sodCat 3529.072 kb on + strandat 3529.097 kb on + strandat 3529.097 kb on + strandat 3529.216 kb on - strandat 3529.378 kb on - strand, within ydhKat 3529.393 kb on - strand, within ydhK

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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3,527,562 + -0.2
3,527,878 + ydhF NOLOHH_17970 0.33 +1.9
3,527,928 + ydhF NOLOHH_17970 0.38 +1.0
3,528,179 + ydhF NOLOHH_17970 0.66 +1.1
3,528,179 + ydhF NOLOHH_17970 0.66 +0.3
3,528,293 + ydhF NOLOHH_17970 0.79 -0.4
3,528,375 + ydhF NOLOHH_17970 0.88 -0.9
3,528,524 + +1.2
3,528,530 + +0.6
3,528,560 + +1.9
3,529,016 + sodC NOLOHH_17975 0.87 -0.6
3,529,017 - sodC NOLOHH_17975 0.87 +1.6
3,529,072 + +0.6
3,529,097 + -2.0
3,529,097 + +0.3
3,529,216 - -1.3
3,529,378 - ydhK NOLOHH_17980 0.15 -1.3
3,529,393 - ydhK NOLOHH_17980 0.15 +0.1

Or see this region's nucleotide sequence