Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17125

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfadD and rnd are separated by 81 nucleotidesrnd and yeaX are separated by 53 nucleotides NOLOHH_17115: fadD - long-chain-fatty-acid--CoA ligase FadD, at 3,360,137 to 3,361,888 fadD NOLOHH_17125: rnd - ribonuclease D, at 3,361,970 to 3,363,085 rnd NOLOHH_17130: yeaX - carnitine monooxygenase subunit YeaX, at 3,363,139 to 3,364,104 yeaX Position (kb) 3361 3362 3363 3364Strain fitness (log2 ratio) -1 0 1 2at 3361.150 kb on + strand, within fadDat 3361.975 kb on + strandat 3362.455 kb on + strand, within rndat 3362.456 kb on - strand, within rndat 3362.583 kb on + strand, within rndat 3362.707 kb on + strand, within rndat 3362.869 kb on + strand, within rndat 3362.899 kb on + strand, within rndat 3362.920 kb on + strand, within rndat 3363.083 kb on + strandat 3363.228 kb on - strandat 3363.346 kb on - strand, within yeaXat 3363.346 kb on - strand, within yeaXat 3363.346 kb on - strand, within yeaXat 3363.520 kb on - strand, within yeaXat 3363.520 kb on - strand, within yeaXat 3363.628 kb on + strand, within yeaXat 3363.676 kb on + strand, within yeaXat 3363.677 kb on - strand, within yeaX

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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3,361,150 + fadD NOLOHH_17115 0.58 +0.9
3,361,975 + +0.9
3,362,455 + rnd NOLOHH_17125 0.43 +0.8
3,362,456 - rnd NOLOHH_17125 0.44 +0.4
3,362,583 + rnd NOLOHH_17125 0.55 +0.1
3,362,707 + rnd NOLOHH_17125 0.66 -0.5
3,362,869 + rnd NOLOHH_17125 0.81 +0.1
3,362,899 + rnd NOLOHH_17125 0.83 -0.8
3,362,920 + rnd NOLOHH_17125 0.85 -0.7
3,363,083 + -0.1
3,363,228 - +0.9
3,363,346 - yeaX NOLOHH_17130 0.21 -0.4
3,363,346 - yeaX NOLOHH_17130 0.21 -0.3
3,363,346 - yeaX NOLOHH_17130 0.21 +1.9
3,363,520 - yeaX NOLOHH_17130 0.39 -0.3
3,363,520 - yeaX NOLOHH_17130 0.39 -0.8
3,363,628 + yeaX NOLOHH_17130 0.51 +0.7
3,363,676 + yeaX NOLOHH_17130 0.56 -1.5
3,363,677 - yeaX NOLOHH_17130 0.56 -0.2

Or see this region's nucleotide sequence