Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17095

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyoaH and NOLOHH_17090 are separated by 119 nucleotidesNOLOHH_17090 and yoaB are separated by 422 nucleotidesyoaB and yoaA are separated by 128 nucleotides NOLOHH_17085: yoaH - YoaH family protein, at 3,355,217 to 3,355,396 yoaH NOLOHH_17090: NOLOHH_17090 - DUF1889 domain-containing protein, at 3,355,516 to 3,355,815 _17090 NOLOHH_17095: yoaB - RutC family protein YoaB, at 3,356,238 to 3,356,585 yoaB NOLOHH_17100: yoaA - putative ATP-dependent DNA helicase YoaA, at 3,356,714 to 3,358,624 yoaA Position (kb) 3356 3357Strain fitness (log2 ratio) -2 -1 0 1 2at 3355.497 kb on - strandat 3355.497 kb on - strandat 3355.545 kb on + strandat 3355.545 kb on + strandat 3355.546 kb on - strand, within NOLOHH_17090at 3355.548 kb on - strand, within NOLOHH_17090at 3355.560 kb on - strand, within NOLOHH_17090at 3355.713 kb on + strand, within NOLOHH_17090at 3355.766 kb on - strand, within NOLOHH_17090at 3355.798 kb on - strandat 3355.828 kb on - strandat 3355.857 kb on - strandat 3355.859 kb on - strandat 3355.878 kb on - strandat 3355.880 kb on + strandat 3356.096 kb on - strandat 3356.271 kb on - strandat 3356.299 kb on - strand, within yoaBat 3356.415 kb on - strand, within yoaBat 3356.513 kb on - strand, within yoaBat 3356.536 kb on - strand, within yoaBat 3356.597 kb on + strandat 3356.685 kb on - strandat 3356.710 kb on + strandat 3356.767 kb on + strandat 3356.914 kb on + strand, within yoaAat 3356.990 kb on + strand, within yoaAat 3357.239 kb on + strand, within yoaAat 3357.240 kb on - strand, within yoaAat 3357.269 kb on - strand, within yoaAat 3357.516 kb on + strand, within yoaA

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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3,355,497 - +1.2
3,355,497 - -2.6
3,355,545 + +1.1
3,355,545 + +0.6
3,355,546 - NOLOHH_17090 0.10 -2.5
3,355,548 - NOLOHH_17090 0.11 -1.6
3,355,560 - NOLOHH_17090 0.15 -0.3
3,355,713 + NOLOHH_17090 0.66 +1.6
3,355,766 - NOLOHH_17090 0.83 +1.7
3,355,798 - -0.1
3,355,828 - -2.6
3,355,857 - +0.5
3,355,859 - -0.6
3,355,878 - -0.8
3,355,880 + +1.9
3,356,096 - -0.6
3,356,271 - +1.1
3,356,299 - yoaB NOLOHH_17095 0.18 -1.7
3,356,415 - yoaB NOLOHH_17095 0.51 -0.8
3,356,513 - yoaB NOLOHH_17095 0.79 -0.3
3,356,536 - yoaB NOLOHH_17095 0.86 -0.2
3,356,597 + +1.1
3,356,685 - -0.3
3,356,710 + -0.4
3,356,767 + +1.1
3,356,914 + yoaA NOLOHH_17100 0.10 +1.6
3,356,990 + yoaA NOLOHH_17100 0.14 -0.4
3,357,239 + yoaA NOLOHH_17100 0.27 -0.2
3,357,240 - yoaA NOLOHH_17100 0.28 +0.2
3,357,269 - yoaA NOLOHH_17100 0.29 +1.2
3,357,516 + yoaA NOLOHH_17100 0.42 +0.4

Or see this region's nucleotide sequence