Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yoaH and NOLOHH_17090 are separated by 119 nucleotides NOLOHH_17090 and yoaB are separated by 422 nucleotides yoaB and yoaA are separated by 128 nucleotides
NOLOHH_17085: yoaH - YoaH family protein, at 3,355,217 to 3,355,396
yoaH
NOLOHH_17090: NOLOHH_17090 - DUF1889 domain-containing protein, at 3,355,516 to 3,355,815
_17090
NOLOHH_17095: yoaB - RutC family protein YoaB, at 3,356,238 to 3,356,585
yoaB
NOLOHH_17100: yoaA - putative ATP-dependent DNA helicase YoaA, at 3,356,714 to 3,358,624
yoaA
Position (kb)
3356
3357 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3355.497 kb on - strand at 3355.497 kb on - strand at 3355.545 kb on + strand at 3355.545 kb on + strand at 3355.546 kb on - strand, within NOLOHH_17090 at 3355.548 kb on - strand, within NOLOHH_17090 at 3355.560 kb on - strand, within NOLOHH_17090 at 3355.713 kb on + strand, within NOLOHH_17090 at 3355.766 kb on - strand, within NOLOHH_17090 at 3355.798 kb on - strand at 3355.828 kb on - strand at 3355.857 kb on - strand at 3355.859 kb on - strand at 3355.878 kb on - strand at 3355.880 kb on + strand at 3356.096 kb on - strand at 3356.271 kb on - strand at 3356.299 kb on - strand, within yoaB at 3356.415 kb on - strand, within yoaB at 3356.513 kb on - strand, within yoaB at 3356.536 kb on - strand, within yoaB at 3356.597 kb on + strand at 3356.685 kb on - strand at 3356.710 kb on + strand at 3356.767 kb on + strand at 3356.914 kb on + strand, within yoaA at 3356.990 kb on + strand, within yoaA at 3357.239 kb on + strand, within yoaA at 3357.240 kb on - strand, within yoaA at 3357.269 kb on - strand, within yoaA at 3357.516 kb on + strand, within yoaA
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 3,355,497 - +1.2 3,355,497 - -2.6 3,355,545 + +1.1 3,355,545 + +0.6 3,355,546 - NOLOHH_17090 0.10 -2.5 3,355,548 - NOLOHH_17090 0.11 -1.6 3,355,560 - NOLOHH_17090 0.15 -0.3 3,355,713 + NOLOHH_17090 0.66 +1.6 3,355,766 - NOLOHH_17090 0.83 +1.7 3,355,798 - -0.1 3,355,828 - -2.6 3,355,857 - +0.5 3,355,859 - -0.6 3,355,878 - -0.8 3,355,880 + +1.9 3,356,096 - -0.6 3,356,271 - +1.1 3,356,299 - yoaB NOLOHH_17095 0.18 -1.7 3,356,415 - yoaB NOLOHH_17095 0.51 -0.8 3,356,513 - yoaB NOLOHH_17095 0.79 -0.3 3,356,536 - yoaB NOLOHH_17095 0.86 -0.2 3,356,597 + +1.1 3,356,685 - -0.3 3,356,710 + -0.4 3,356,767 + +1.1 3,356,914 + yoaA NOLOHH_17100 0.10 +1.6 3,356,990 + yoaA NOLOHH_17100 0.14 -0.4 3,357,239 + yoaA NOLOHH_17100 0.27 -0.2 3,357,240 - yoaA NOLOHH_17100 0.28 +0.2 3,357,269 - yoaA NOLOHH_17100 0.29 +1.2 3,357,516 + yoaA NOLOHH_17100 0.42 +0.4
Or see this region's nucleotide sequence