Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17025

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcspE and rlmA are separated by 165 nucleotidesrlmA and mntP overlap by 4 nucleotidesmntP and NOLOHH_17035 are separated by 428 nucleotides NOLOHH_17020: cspE - transcription antiterminator/RNA stability regulator CspE, at 3,342,513 to 3,342,722 cspE NOLOHH_17025: rlmA - 23S rRNA (guanine(745)-N(1))-methyltransferase, at 3,342,888 to 3,343,697 rlmA NOLOHH_17030: mntP - manganese efflux pump MntP, at 3,343,694 to 3,344,260 mntP NOLOHH_17035: NOLOHH_17035 - UPF0266 membrane protein YobD, at 3,344,689 to 3,345,147 _17035 Position (kb) 3342 3343 3344Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3342.094 kb on + strandat 3342.154 kb on + strandat 3342.203 kb on - strandat 3342.204 kb on + strandat 3342.226 kb on + strandat 3342.226 kb on + strandat 3342.226 kb on + strandat 3342.226 kb on + strandat 3342.305 kb on + strandat 3342.313 kb on + strandat 3342.356 kb on + strandat 3342.429 kb on + strandat 3342.431 kb on + strandat 3342.467 kb on + strandat 3342.467 kb on + strandat 3342.467 kb on + strandat 3342.467 kb on + strandat 3342.472 kb on + strandat 3342.870 kb on + strandat 3342.942 kb on + strandat 3342.942 kb on + strandat 3342.942 kb on + strandat 3342.944 kb on + strandat 3342.944 kb on + strandat 3342.987 kb on + strand, within rlmAat 3343.013 kb on + strand, within rlmAat 3343.052 kb on - strand, within rlmAat 3343.345 kb on + strand, within rlmAat 3343.353 kb on + strand, within rlmAat 3343.471 kb on + strand, within rlmAat 3343.667 kb on + strandat 3343.670 kb on + strandat 3343.823 kb on - strand, within mntPat 3343.823 kb on - strand, within mntPat 3343.862 kb on - strand, within mntPat 3344.028 kb on - strand, within mntPat 3344.225 kb on - strandat 3344.246 kb on - strandat 3344.246 kb on - strandat 3344.255 kb on - strandat 3344.318 kb on + strandat 3344.319 kb on - strandat 3344.319 kb on - strandat 3344.319 kb on - strandat 3344.401 kb on - strandat 3344.412 kb on - strandat 3344.435 kb on - strandat 3344.435 kb on - strandat 3344.435 kb on - strandat 3344.447 kb on - strandat 3344.473 kb on - strandat 3344.516 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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3,342,094 + +0.7
3,342,154 + +0.3
3,342,203 - +0.5
3,342,204 + -0.1
3,342,226 + -0.2
3,342,226 + -0.3
3,342,226 + -0.4
3,342,226 + -0.8
3,342,305 + +1.7
3,342,313 + +2.6
3,342,356 + +0.3
3,342,429 + +1.5
3,342,431 + +0.8
3,342,467 + +1.5
3,342,467 + +0.2
3,342,467 + +1.4
3,342,467 + +3.1
3,342,472 + +2.0
3,342,870 + -0.4
3,342,942 + +0.0
3,342,942 + -0.7
3,342,942 + +1.0
3,342,944 + +0.7
3,342,944 + +0.6
3,342,987 + rlmA NOLOHH_17025 0.12 +1.4
3,343,013 + rlmA NOLOHH_17025 0.15 -0.8
3,343,052 - rlmA NOLOHH_17025 0.20 -1.2
3,343,345 + rlmA NOLOHH_17025 0.56 -0.5
3,343,353 + rlmA NOLOHH_17025 0.57 -1.1
3,343,471 + rlmA NOLOHH_17025 0.72 -0.4
3,343,667 + +0.7
3,343,670 + -0.2
3,343,823 - mntP NOLOHH_17030 0.23 -0.6
3,343,823 - mntP NOLOHH_17030 0.23 +0.7
3,343,862 - mntP NOLOHH_17030 0.30 +0.4
3,344,028 - mntP NOLOHH_17030 0.59 -0.6
3,344,225 - +0.8
3,344,246 - +1.4
3,344,246 - +0.4
3,344,255 - +0.2
3,344,318 + +0.0
3,344,319 - -1.1
3,344,319 - -1.2
3,344,319 - +1.9
3,344,401 - -2.2
3,344,412 - +0.1
3,344,435 - +0.0
3,344,435 - +0.2
3,344,435 - -1.1
3,344,447 - +0.6
3,344,473 - +0.3
3,344,516 - -0.2

Or see this region's nucleotide sequence