Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cspE and rlmA are separated by 165 nucleotides rlmA and mntP overlap by 4 nucleotides mntP and NOLOHH_17035 are separated by 428 nucleotides
NOLOHH_17020: cspE - transcription antiterminator/RNA stability regulator CspE, at 3,342,513 to 3,342,722
cspE
NOLOHH_17025: rlmA - 23S rRNA (guanine(745)-N(1))-methyltransferase, at 3,342,888 to 3,343,697
rlmA
NOLOHH_17030: mntP - manganese efflux pump MntP, at 3,343,694 to 3,344,260
mntP
NOLOHH_17035: NOLOHH_17035 - UPF0266 membrane protein YobD, at 3,344,689 to 3,345,147
_17035
Position (kb)
3342
3343
3344 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3342.094 kb on + strand at 3342.154 kb on + strand at 3342.203 kb on - strand at 3342.204 kb on + strand at 3342.226 kb on + strand at 3342.226 kb on + strand at 3342.226 kb on + strand at 3342.226 kb on + strand at 3342.305 kb on + strand at 3342.313 kb on + strand at 3342.356 kb on + strand at 3342.429 kb on + strand at 3342.431 kb on + strand at 3342.467 kb on + strand at 3342.467 kb on + strand at 3342.467 kb on + strand at 3342.467 kb on + strand at 3342.472 kb on + strand at 3342.870 kb on + strand at 3342.942 kb on + strand at 3342.942 kb on + strand at 3342.942 kb on + strand at 3342.944 kb on + strand at 3342.944 kb on + strand at 3342.987 kb on + strand, within rlmA at 3343.013 kb on + strand, within rlmA at 3343.052 kb on - strand, within rlmA at 3343.345 kb on + strand, within rlmA at 3343.353 kb on + strand, within rlmA at 3343.471 kb on + strand, within rlmA at 3343.667 kb on + strand at 3343.670 kb on + strand at 3343.823 kb on - strand, within mntP at 3343.823 kb on - strand, within mntP at 3343.862 kb on - strand, within mntP at 3344.028 kb on - strand, within mntP at 3344.225 kb on - strand at 3344.246 kb on - strand at 3344.246 kb on - strand at 3344.255 kb on - strand at 3344.318 kb on + strand at 3344.319 kb on - strand at 3344.319 kb on - strand at 3344.319 kb on - strand at 3344.401 kb on - strand at 3344.412 kb on - strand at 3344.435 kb on - strand at 3344.435 kb on - strand at 3344.435 kb on - strand at 3344.447 kb on - strand at 3344.473 kb on - strand at 3344.516 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 3,342,094 + +0.7 3,342,154 + +0.3 3,342,203 - +0.5 3,342,204 + -0.1 3,342,226 + -0.2 3,342,226 + -0.3 3,342,226 + -0.4 3,342,226 + -0.8 3,342,305 + +1.7 3,342,313 + +2.6 3,342,356 + +0.3 3,342,429 + +1.5 3,342,431 + +0.8 3,342,467 + +1.5 3,342,467 + +0.2 3,342,467 + +1.4 3,342,467 + +3.1 3,342,472 + +2.0 3,342,870 + -0.4 3,342,942 + +0.0 3,342,942 + -0.7 3,342,942 + +1.0 3,342,944 + +0.7 3,342,944 + +0.6 3,342,987 + rlmA NOLOHH_17025 0.12 +1.4 3,343,013 + rlmA NOLOHH_17025 0.15 -0.8 3,343,052 - rlmA NOLOHH_17025 0.20 -1.2 3,343,345 + rlmA NOLOHH_17025 0.56 -0.5 3,343,353 + rlmA NOLOHH_17025 0.57 -1.1 3,343,471 + rlmA NOLOHH_17025 0.72 -0.4 3,343,667 + +0.7 3,343,670 + -0.2 3,343,823 - mntP NOLOHH_17030 0.23 -0.6 3,343,823 - mntP NOLOHH_17030 0.23 +0.7 3,343,862 - mntP NOLOHH_17030 0.30 +0.4 3,344,028 - mntP NOLOHH_17030 0.59 -0.6 3,344,225 - +0.8 3,344,246 - +1.4 3,344,246 - +0.4 3,344,255 - +0.2 3,344,318 + +0.0 3,344,319 - -1.1 3,344,319 - -1.2 3,344,319 - +1.9 3,344,401 - -2.2 3,344,412 - +0.1 3,344,435 - +0.0 3,344,435 - +0.2 3,344,435 - -1.1 3,344,447 - +0.6 3,344,473 - +0.3 3,344,516 - -0.2
Or see this region's nucleotide sequence