Strain Fitness in Escherichia coli ECOR27 around NOLOHH_05005

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjcS and ytcA are separated by 208 nucleotidesytcA and mdtN are separated by 18 nucleotides NOLOHH_05000: yjcS - alkyl sulfatase YjcS, at 912,522 to 914,507 yjcS NOLOHH_05005: ytcA - Uncharacterized protein YtcA, at 914,716 to 914,991 ytcA NOLOHH_05010: mdtN - multidrug efflux transporter periplasmic adaptor subunit MdtN, at 915,010 to 916,041 mdtN Position (kb) 914 915Strain fitness (log2 ratio) -1 0 1 2at 913.746 kb on - strand, within yjcSat 913.764 kb on + strand, within yjcSat 913.800 kb on + strand, within yjcSat 913.800 kb on + strand, within yjcSat 913.800 kb on + strand, within yjcSat 913.800 kb on + strand, within yjcSat 913.801 kb on - strand, within yjcSat 913.801 kb on - strand, within yjcSat 913.801 kb on - strand, within yjcSat 913.801 kb on - strand, within yjcSat 913.801 kb on - strand, within yjcSat 913.801 kb on - strand, within yjcSat 913.802 kb on + strand, within yjcSat 913.803 kb on - strand, within yjcSat 913.809 kb on + strand, within yjcSat 913.810 kb on - strand, within yjcSat 913.821 kb on + strand, within yjcSat 913.822 kb on - strand, within yjcSat 913.822 kb on - strand, within yjcSat 913.871 kb on + strand, within yjcSat 913.872 kb on - strand, within yjcSat 913.872 kb on - strand, within yjcSat 913.878 kb on + strand, within yjcSat 913.878 kb on + strand, within yjcSat 913.879 kb on - strand, within yjcSat 913.879 kb on - strand, within yjcSat 913.879 kb on - strand, within yjcSat 914.027 kb on + strand, within yjcSat 914.117 kb on + strand, within yjcSat 914.117 kb on + strand, within yjcSat 914.117 kb on + strand, within yjcSat 914.117 kb on + strand, within yjcSat 914.117 kb on + strand, within yjcSat 914.117 kb on + strand, within yjcSat 914.118 kb on - strand, within yjcSat 914.118 kb on - strand, within yjcSat 914.118 kb on - strand, within yjcSat 914.189 kb on + strand, within yjcSat 914.190 kb on - strand, within yjcSat 914.232 kb on - strand, within yjcSat 914.250 kb on - strand, within yjcSat 914.297 kb on + strand, within yjcSat 914.297 kb on + strand, within yjcSat 914.297 kb on + strand, within yjcSat 914.298 kb on - strand, within yjcSat 914.306 kb on + strand, within yjcSat 914.340 kb on + strandat 914.341 kb on - strandat 914.341 kb on - strandat 914.402 kb on - strandat 914.565 kb on - strandat 914.620 kb on + strandat 914.802 kb on - strand, within ytcAat 914.934 kb on + strand, within ytcAat 914.959 kb on + strand, within ytcAat 914.959 kb on + strand, within ytcAat 914.995 kb on - strandat 914.995 kb on - strandat 915.018 kb on + strandat 915.018 kb on + strandat 915.107 kb on + strandat 915.126 kb on + strand, within mdtNat 915.127 kb on - strand, within mdtNat 915.127 kb on - strand, within mdtNat 915.127 kb on - strand, within mdtNat 915.150 kb on + strand, within mdtNat 915.151 kb on - strand, within mdtNat 915.151 kb on - strand, within mdtNat 915.188 kb on + strand, within mdtNat 915.188 kb on + strand, within mdtNat 915.188 kb on + strand, within mdtNat 915.315 kb on + strand, within mdtNat 915.315 kb on + strand, within mdtNat 915.316 kb on - strand, within mdtNat 915.316 kb on - strand, within mdtNat 915.331 kb on - strand, within mdtNat 915.378 kb on - strand, within mdtNat 915.414 kb on + strand, within mdtNat 915.414 kb on + strand, within mdtNat 915.414 kb on + strand, within mdtNat 915.414 kb on + strand, within mdtNat 915.415 kb on - strand, within mdtNat 915.415 kb on - strand, within mdtNat 915.415 kb on - strand, within mdtNat 915.415 kb on - strand, within mdtNat 915.437 kb on + strand, within mdtNat 915.514 kb on - strand, within mdtNat 915.522 kb on - strand, within mdtNat 915.527 kb on + strand, within mdtNat 915.725 kb on + strand, within mdtNat 915.745 kb on + strand, within mdtNat 915.746 kb on - strand, within mdtNat 915.795 kb on + strand, within mdtNat 915.795 kb on + strand, within mdtNat 915.795 kb on + strand, within mdtNat 915.795 kb on + strand, within mdtNat 915.796 kb on - strand, within mdtNat 915.796 kb on - strand, within mdtNat 915.927 kb on + strand, within mdtNat 915.927 kb on + strand, within mdtNat 915.928 kb on - strand, within mdtNat 915.928 kb on - strand, within mdtNat 915.930 kb on + strand, within mdtNat 915.930 kb on + strand, within mdtNat 915.930 kb on + strand, within mdtNat 915.930 kb on + strand, within mdtN

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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913,746 - yjcS NOLOHH_05000 0.62 +0.5
913,764 + yjcS NOLOHH_05000 0.63 +0.6
913,800 + yjcS NOLOHH_05000 0.64 -0.7
913,800 + yjcS NOLOHH_05000 0.64 +1.0
913,800 + yjcS NOLOHH_05000 0.64 +0.1
913,800 + yjcS NOLOHH_05000 0.64 -0.3
913,801 - yjcS NOLOHH_05000 0.64 +0.3
913,801 - yjcS NOLOHH_05000 0.64 +0.6
913,801 - yjcS NOLOHH_05000 0.64 -0.4
913,801 - yjcS NOLOHH_05000 0.64 +0.2
913,801 - yjcS NOLOHH_05000 0.64 +0.4
913,801 - yjcS NOLOHH_05000 0.64 +0.4
913,802 + yjcS NOLOHH_05000 0.64 -0.2
913,803 - yjcS NOLOHH_05000 0.65 -0.6
913,809 + yjcS NOLOHH_05000 0.65 +0.1
913,810 - yjcS NOLOHH_05000 0.65 +0.1
913,821 + yjcS NOLOHH_05000 0.65 -1.0
913,822 - yjcS NOLOHH_05000 0.65 -0.2
913,822 - yjcS NOLOHH_05000 0.65 +0.0
913,871 + yjcS NOLOHH_05000 0.68 +0.2
913,872 - yjcS NOLOHH_05000 0.68 +0.2
913,872 - yjcS NOLOHH_05000 0.68 -0.4
913,878 + yjcS NOLOHH_05000 0.68 +1.1
913,878 + yjcS NOLOHH_05000 0.68 -0.2
913,879 - yjcS NOLOHH_05000 0.68 -0.8
913,879 - yjcS NOLOHH_05000 0.68 +0.0
913,879 - yjcS NOLOHH_05000 0.68 -0.0
914,027 + yjcS NOLOHH_05000 0.76 -0.2
914,117 + yjcS NOLOHH_05000 0.80 -0.5
914,117 + yjcS NOLOHH_05000 0.80 -0.6
914,117 + yjcS NOLOHH_05000 0.80 -0.3
914,117 + yjcS NOLOHH_05000 0.80 +0.0
914,117 + yjcS NOLOHH_05000 0.80 +0.3
914,117 + yjcS NOLOHH_05000 0.80 +0.3
914,118 - yjcS NOLOHH_05000 0.80 -1.3
914,118 - yjcS NOLOHH_05000 0.80 +0.6
914,118 - yjcS NOLOHH_05000 0.80 +0.8
914,189 + yjcS NOLOHH_05000 0.84 +0.3
914,190 - yjcS NOLOHH_05000 0.84 +0.4
914,232 - yjcS NOLOHH_05000 0.86 +0.3
914,250 - yjcS NOLOHH_05000 0.87 -1.1
914,297 + yjcS NOLOHH_05000 0.89 -0.5
914,297 + yjcS NOLOHH_05000 0.89 +0.0
914,297 + yjcS NOLOHH_05000 0.89 +0.5
914,298 - yjcS NOLOHH_05000 0.89 +0.5
914,306 + yjcS NOLOHH_05000 0.90 -0.1
914,340 + -0.1
914,341 - -0.4
914,341 - +0.2
914,402 - -0.0
914,565 - +0.2
914,620 + -0.6
914,802 - ytcA NOLOHH_05005 0.31 +0.6
914,934 + ytcA NOLOHH_05005 0.79 -0.0
914,959 + ytcA NOLOHH_05005 0.88 -1.3
914,959 + ytcA NOLOHH_05005 0.88 -1.6
914,995 - +0.4
914,995 - -0.1
915,018 + +0.9
915,018 + +0.3
915,107 + +0.4
915,126 + mdtN NOLOHH_05010 0.11 -0.3
915,127 - mdtN NOLOHH_05010 0.11 -0.6
915,127 - mdtN NOLOHH_05010 0.11 +0.0
915,127 - mdtN NOLOHH_05010 0.11 +0.2
915,150 + mdtN NOLOHH_05010 0.14 -0.7
915,151 - mdtN NOLOHH_05010 0.14 +0.1
915,151 - mdtN NOLOHH_05010 0.14 -0.9
915,188 + mdtN NOLOHH_05010 0.17 +1.1
915,188 + mdtN NOLOHH_05010 0.17 -0.3
915,188 + mdtN NOLOHH_05010 0.17 -0.5
915,315 + mdtN NOLOHH_05010 0.30 -0.0
915,315 + mdtN NOLOHH_05010 0.30 +0.3
915,316 - mdtN NOLOHH_05010 0.30 +1.1
915,316 - mdtN NOLOHH_05010 0.30 +0.1
915,331 - mdtN NOLOHH_05010 0.31 +0.1
915,378 - mdtN NOLOHH_05010 0.36 -0.4
915,414 + mdtN NOLOHH_05010 0.39 +0.4
915,414 + mdtN NOLOHH_05010 0.39 -0.5
915,414 + mdtN NOLOHH_05010 0.39 +0.8
915,414 + mdtN NOLOHH_05010 0.39 +0.6
915,415 - mdtN NOLOHH_05010 0.39 -1.0
915,415 - mdtN NOLOHH_05010 0.39 +0.2
915,415 - mdtN NOLOHH_05010 0.39 +0.0
915,415 - mdtN NOLOHH_05010 0.39 +0.0
915,437 + mdtN NOLOHH_05010 0.41 +0.5
915,514 - mdtN NOLOHH_05010 0.49 +0.1
915,522 - mdtN NOLOHH_05010 0.50 +0.8
915,527 + mdtN NOLOHH_05010 0.50 +0.4
915,725 + mdtN NOLOHH_05010 0.69 +1.8
915,745 + mdtN NOLOHH_05010 0.71 -0.2
915,746 - mdtN NOLOHH_05010 0.71 +1.0
915,795 + mdtN NOLOHH_05010 0.76 +0.8
915,795 + mdtN NOLOHH_05010 0.76 -0.6
915,795 + mdtN NOLOHH_05010 0.76 -0.4
915,795 + mdtN NOLOHH_05010 0.76 -0.0
915,796 - mdtN NOLOHH_05010 0.76 +0.7
915,796 - mdtN NOLOHH_05010 0.76 +0.5
915,927 + mdtN NOLOHH_05010 0.89 +0.1
915,927 + mdtN NOLOHH_05010 0.89 -0.2
915,928 - mdtN NOLOHH_05010 0.89 +0.5
915,928 - mdtN NOLOHH_05010 0.89 +0.3
915,930 + mdtN NOLOHH_05010 0.89 +0.0
915,930 + mdtN NOLOHH_05010 0.89 -0.1
915,930 + mdtN NOLOHH_05010 0.89 +0.9
915,930 + mdtN NOLOHH_05010 0.89 -0.8

Or see this region's nucleotide sequence